RNA–Protein interactions for RNA: ENST00000459783.5

MRPL55-223, Transcript of mitochondrial ribosomal protein L55, human

TSL 5 BASIC

Gene MRPL55, Length 694 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-223	ENST00000459783	ATG2A	Q2TAZ0	1938 aa		11.21	□□□□□ -0.62
MRPL55-223	ENST00000459783	NRP1	O14786	923 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	EIF3D	O15371	548 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	MYL1	P05976	194 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	IGFBP4	P22692	258 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	ACOT2	P49753	483 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	ERVFC1	P60507	584 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	UBE2H	P62256	183 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	PLCB3	Q01970	1234 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	RNASEL	Q05823	741 aa	Known RBP	11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	SPAG1	Q07617	926 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	SCARA3	Q6AZY7	606 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	SMYD4	Q8IYR2	804 aa	Predicted RBP	11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	HACE1	Q8IYU2	909 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	POF1B	Q8WVV4	589 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	RSPH1	Q8WYR4	309 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	C18orf25	Q96B23	403 aa	Predicted RBP	11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	MRPL38	Q96DV4	380 aa	Known RBP	11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	SAAL1	Q96ER3	474 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	IGSF21	Q96ID5	467 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	ACAP3	Q96P50	834 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	CCDC94	Q9BW85	323 aa	Predicted RBP	11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	EXOC1	Q9NV70	894 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	SPG21	Q9NZD8	308 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	CNTN3	Q9P232	1028 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	PRG3	Q9Y2Y8	225 aa	Predicted RBP	11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	PCDHB12	Q9Y5F1	795 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	PCDHA5	Q9Y5H7	936 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	PLXNA4	Q9HCM2	1894 aa		11.2	□□□□□ -0.62
MRPL55-223	ENST00000459783	PRRC2B	Q5JSZ5	2229 aa	Known RBP	11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	GOLGA8IP	A6NC78	632 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	CASTOR2	A6NHX0	329 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	GOLGA8J	A6NMD2	632 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	LACTBL1	A8MY62	500 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	FSCN2	O14926	492 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	CLTA	P09496	248 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	KCNE1	P15382	129 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	ABCD1	P33897	745 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	MATR3	P43243	847 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	GUCY2F	P51841	1108 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	TUSC3	Q13454	348 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	KCNB1	Q14721	858 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	ZBTB6	Q15916	424 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	CSPP1	Q1MSJ5	1256 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	TAS1R1	Q7RTX1	841 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	ADGRD2	Q7Z7M1	963 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	RNF168	Q8IYW5	571 aa	Predicted RBP	11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	C3orf58	Q8NDZ4	430 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	RPS6KC1	Q96S38	1066 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	GAS2L1	Q99501	681 aa	Predicted RBP	11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	TMEM175	Q9BSA9	504 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	GZF1	Q9H116	711 aa	Predicted RBP	11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	KCTD10	Q9H3F6	313 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	PCIF1	Q9H4Z3	704 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	PRDM6	Q9NQX0	595 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	AGPAT3	Q9NRZ7	376 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	KANSL3	Q9P2N6	904 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	TUBGCP4	Q9UGJ1	667 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	AGO2	Q9UKV8	859 aa	Known RBP	11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	EXOC7	Q9UPT5	735 aa		11.19	□□□□□ -0.62
MRPL55-223	ENST00000459783	UBE4B	O95155	1302 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	CLIC2	O15247	247 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	KIF4A	O95239	1232 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	TH	P07101	528 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	NFIC	P08651	508 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	BMP6	P22004	513 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	GART	P22102	1010 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	GTF2F1	P35269	517 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	OR1G1	P47890	313 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	ALDH7A1	P49419	539 aa	Known RBP	11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	CCDC85B	Q15834	202 aa	Predicted RBP	11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	KNOP1	Q1ED39	458 aa	Known RBP	11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	SLFN12L	Q6IEE8	588 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	KANK3	Q6NY19	840 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	CBWD2	Q8IUF1	395 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	EFCAB13	Q8IY85	973 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	ELOA2	Q8IYF1	753 aa	Predicted RBP	11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	SYCP3	Q8IZU3	236 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	MICALL1	Q8N3F8	863 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	MAFA	Q8NHW3	353 aa	Predicted RBP	11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	AUTS2	Q8WXX7	1259 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	POMGNT1	Q8WZA1	660 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	FAM213A	Q9BRX8	229 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	GPR62	Q9BZJ7	368 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	LMAN2L	Q9H0V9	348 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	TMEM206	Q9H813	350 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	AAAS	Q9NRG9	546 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	MAPK8IP1	Q9UQF2	711 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	LZTS1	Q9Y250	596 aa		11.18	□□□□□ -0.62
MRPL55-223	ENST00000459783	TRANK1	O15050	2925 aa		11.17	□□□□□ -0.62
MRPL55-223	ENST00000459783	PTPRJ	Q12913	1337 aa		11.17	□□□□□ -0.62
MRPL55-223	ENST00000459783	HIDE1	A8MVS5	230 aa		11.17	□□□□□ -0.62
MRPL55-223	ENST00000459783	PPEF2	O14830	753 aa		11.17	□□□□□ -0.62
MRPL55-223	ENST00000459783	KIN	O60870	393 aa	Known RBP	11.17	□□□□□ -0.62
MRPL55-223	ENST00000459783	PPM1A	P35813	382 aa		11.17	□□□□□ -0.62
MRPL55-223	ENST00000459783	CLCNKB	P51801	687 aa		11.17	□□□□□ -0.62
MRPL55-223	ENST00000459783	YARS	P54577	528 aa	Known RBP	11.17	□□□□□ -0.62
MRPL55-223	ENST00000459783	RBM10	P98175	930 aa	Known RBP	11.17	□□□□□ -0.62
MRPL55-223	ENST00000459783	PSMD2	Q13200	908 aa		11.17	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms