RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 CEP350Q5VT06 3117 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 TCRBV7S2A1N4TA0A589 114 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 TMEM120BA0PK00 339 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 PIK3CDO00329 1044 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 IGF2BP3O00425 579 aaKnown RBP eCLIP9.09□□□□□ -0.95
VPS50-208ENST00000458707 LRRN2O75325 713 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 WFS1O76024 890 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 HLA-DOAP06340 250 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 EEF2P13639 858 aaKnown RBP9.09□□□□□ -0.95
VPS50-208ENST00000458707 LMNB2Q03252 620 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 CCDC15Q0P6D6 951 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 CALCOCO2Q13137 446 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 ACVR2BQ13705 512 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 CCDC38Q502W7 563 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 EPC2Q52LR7 807 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 SLFN13Q68D06 897 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 RNF43Q68DV7 783 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 PRR5LQ6MZQ0 368 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 OTOP1Q7RTM1 612 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 FAM178BQ8IXR5 827 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 RBM12BQ8IXT5 1001 aaKnown RBP9.09□□□□□ -0.95
VPS50-208ENST00000458707 CCDC105Q8IYK2 499 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 ARMC2Q8NEN0 867 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 PTCD2Q8WV60 388 aaKnown RBP9.09□□□□□ -0.95
VPS50-208ENST00000458707 CNKSR1Q969H4 720 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 IFT74Q96LB3 600 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 DNAJC18Q9H819 358 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 CHCHD3Q9NX63 227 aaKnown RBP9.09□□□□□ -0.95
VPS50-208ENST00000458707 CPSF2Q9P2I0 782 aaKnown RBP9.09□□□□□ -0.95
VPS50-208ENST00000458707 SUN2Q9UH99 717 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 LGALS13Q9UHV8 139 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 L3MBTL1Q9Y468 752 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 CD2APQ9Y5K6 639 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 ZNF536O15090 1300 aa9.09□□□□□ -0.95
VPS50-208ENST00000458707 FSCN2O14926 492 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 PMM2O15305 246 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 PSMD10O75832 226 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 BBOX1O75936 387 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 ECM2O94769 699 aaPredicted RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 ECEL1O95672 775 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 CYP1A2P05177 515 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 KRT16P08779 473 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 RPSAP08865 295 aaKnown RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 CHRNB2P17787 502 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 ITIH2P19823 946 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 IBSPP21815 317 aaPredicted RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 PDE6BP35913 854 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 CYP2J2P51589 502 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 GTF2IP78347 998 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 MESDQ14696 234 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 LONRF1Q17RB8 773 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 NUGGCQ68CJ6 796 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 SYDE1Q6ZW31 735 aaPredicted RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 INTS8Q75QN2 995 aaKnown RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 SPATA21Q7Z572 469 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 FBXO11Q86XK2 927 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 C12orf56Q8IXR9 622 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 RPUSD2Q8IZ73 545 aaKnown RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 FITM2Q8N6M3 262 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 UHMK1Q8TAS1 419 aaKnown RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 CYP2W1Q8TAV3 490 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 PIGOQ8TEQ8 1089 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 DYDC1Q8WWB3 177 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 PSPC1Q8WXF1 523 aaKnown RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 KLHL29Q96CT2 875 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 ANKRD27Q96NW4 1050 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 PCDHB18PQ96TA0 734 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 DDX23Q9BUQ8 820 aaKnown RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 TRIM6Q9C030 488 aaPredicted RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 NOCTQ9UK39 431 aaKnown RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 ZNF232Q9UNY5 417 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 ACTL7BQ9Y614 415 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 ADGRA3Q8IWK6 1321 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 ARID2Q68CP9 1835 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 LIN7AO14910 233 aaPredicted RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 MAPK13O15264 365 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 NEBLO76041 1014 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 TTC4O95801 387 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 CREB1P16220 341 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 IVDP26440 423 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 HOXA10P31260 410 aaPredicted RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 MSH2P43246 934 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 PRELPP51888 382 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 CAV1Q03135 178 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 NAA25Q14CX7 972 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 RBBP5Q15291 538 aaKnown RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 SYDE2Q5VT97 1194 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 CDC42EP5Q6NZY7 148 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 HHIPL2Q6UWX4 724 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 RNF207Q6ZRF8 634 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 BZW1Q7L1Q6 419 aaKnown RBP9.08□□□□□ -0.96
VPS50-208ENST00000458707 PTF1AQ7RTS3 328 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 NCAPG2Q86XI2 1143 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 SIAH1Q8IUQ4 282 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 KSR1Q8IVT5 923 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 ARHGEF19Q8IW93 802 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 FAM71AQ8IYT1 594 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 CERS5Q8N5B7 392 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 GMCL1P1Q8NEA9 526 aa9.08□□□□□ -0.96
VPS50-208ENST00000458707 EPS8L1Q8TE68 723 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms