RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 COA7Q96BR5 231 aa5.25□□□□□ -1.57
USP40-209ENST00000452724 PGBD4Q96DM1 585 aa5.25□□□□□ -1.57
USP40-209ENST00000452724 HSPBAP1Q96EW2 488 aa5.25□□□□□ -1.57
USP40-209ENST00000452724 IL17RAQ96F46 866 aa5.25□□□□□ -1.57
USP40-209ENST00000452724 FAM193BQ96PV7 902 aaPredicted RBP5.25□□□□□ -1.57
USP40-209ENST00000452724 UHRF1Q96T88 793 aaPredicted RBP5.25□□□□□ -1.57
USP40-209ENST00000452724 CDC5LQ99459 802 aaKnown RBP5.25□□□□□ -1.57
USP40-209ENST00000452724 C7orf25Q9BPX7 421 aa5.25□□□□□ -1.57
USP40-209ENST00000452724 RHOBTB2Q9BYZ6 727 aa5.25□□□□□ -1.57
USP40-209ENST00000452724 CDH19Q9H159 772 aa5.25□□□□□ -1.57
USP40-209ENST00000452724 NRDE2Q9H7Z3 1164 aa5.25□□□□□ -1.57
USP40-209ENST00000452724 BCO1Q9HAY6 547 aa5.25□□□□□ -1.57
USP40-209ENST00000452724 ZIM2Q9NZV7 527 aa5.25□□□□□ -1.57
USP40-209ENST00000452724 TCEAL9Q9UHQ7 104 aa5.25□□□□□ -1.57
USP40-209ENST00000452724 SERPINB13Q9UIV8 391 aa5.25□□□□□ -1.57
USP40-209ENST00000452724 ANKRD6Q9Y2G4 727 aa5.25□□□□□ -1.57
USP40-209ENST00000452724 KLRG2A4D1S0 409 aaPredicted RBP5.24□□□□□ -1.57
USP40-209ENST00000452724 CCDC154A6NI56 674 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 ADCY6O43306 1168 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 RECQL4O94761 1208 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 HSP90B1P14625 803 aaKnown RBP5.24□□□□□ -1.57
USP40-209ENST00000452724 ZSCAN20P17040 1043 aaPredicted RBP5.24□□□□□ -1.57
USP40-209ENST00000452724 SREBF1P36956 1147 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 GZMKP49863 264 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 NFE2Q16621 373 aaPredicted RBP5.24□□□□□ -1.57
USP40-209ENST00000452724 NAIF1Q69YI7 327 aaPredicted RBP5.24□□□□□ -1.57
USP40-209ENST00000452724 HTR3DQ70Z44 454 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 MIGA2Q7L4E1 593 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 LDLRAD3Q86YD5 345 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 ULK2Q8IYT8 1036 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 PQLC1Q8N2U9 271 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 ZNF276Q8N554 614 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.24□□□□□ -1.57
USP40-209ENST00000452724 JPH3Q8WXH2 748 aaPredicted RBP5.24□□□□□ -1.57
USP40-209ENST00000452724 HDAC10Q969S8 669 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 CAMKK2Q96RR4 588 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 NUP88Q99567 741 aaPredicted RBP5.24□□□□□ -1.57
USP40-209ENST00000452724 LIMCH1Q9UPQ0 1083 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 HDAC5Q9UQL6 1122 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 IPPQ9Y573 584 aa5.24□□□□□ -1.57
USP40-209ENST00000452724 HTRA2O43464 458 aaPredicted RBP5.23□□□□□ -1.57
USP40-209ENST00000452724 FAM20BO75063 409 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 RPS6KA4O75676 772 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 STC2O76061 302 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 VCAM1P19320 739 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 PTPN7P35236 360 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 SLC6A9P48067 706 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 SLC25A3Q00325 362 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 APBA1Q02410 837 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 MRPL49Q13405 166 aaKnown RBP5.23□□□□□ -1.57
USP40-209ENST00000452724 PPP2R5AQ15172 486 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 FAM214AQ32MH5 1076 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 C3orf36Q3SXR2 165 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 PRAMEF14Q5SWL7 426 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 PDZD4Q76G19 769 aaPredicted RBP5.23□□□□□ -1.57
USP40-209ENST00000452724 FAM83AQ86UY5 434 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 RHOT1Q8IXI2 618 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 TRMT2AQ8IZ69 625 aaKnown RBP5.23□□□□□ -1.57
USP40-209ENST00000452724 MDM1Q8TC05 714 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 CPPED1Q9BRF8 314 aaPredicted RBP5.23□□□□□ -1.57
USP40-209ENST00000452724 PDCD2LQ9BRP1 358 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 SIK3Q9Y2K2 1263 aa5.23□□□□□ -1.57
USP40-209ENST00000452724 HOXA3O43365 443 aaPredicted RBP5.22□□□□□ -1.57
USP40-209ENST00000452724 PPFIA2O75334 1257 aa5.22□□□□□ -1.57
USP40-209ENST00000452724 SCGB1D2O95969 90 aa5.22□□□□□ -1.57
USP40-209ENST00000452724 HK1P19367 917 aa5.22□□□□□ -1.57
USP40-209ENST00000452724 EDNRBP24530 442 aa5.22□□□□□ -1.57
USP40-209ENST00000452724 LRRC41Q15345 812 aa5.22□□□□□ -1.57
USP40-209ENST00000452724 RRP12Q5JTH9 1297 aaKnown RBP5.22□□□□□ -1.57
USP40-209ENST00000452724 METTL24Q5JXM2 366 aa5.22□□□□□ -1.57
USP40-209ENST00000452724 REPS2Q8NFH8 660 aa5.22□□□□□ -1.57
USP40-209ENST00000452724 SENP6Q9GZR1 1112 aaPredicted RBP5.22□□□□□ -1.57
USP40-209ENST00000452724 MANSC1Q9H8J5 431 aa5.22□□□□□ -1.57
USP40-209ENST00000452724 LANCL2Q9NS86 450 aa5.22□□□□□ -1.57
USP40-209ENST00000452724 GPRC5BQ9NZH0 403 aa5.22□□□□□ -1.57
USP40-209ENST00000452724 PNMA8BQ9ULN7 279 aaPredicted RBP5.22□□□□□ -1.57
USP40-209ENST00000452724 CLCA2Q9UQC9 943 aa5.22□□□□□ -1.57
USP40-209ENST00000452724 ZMYM3Q14202 1370 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 TRIM24O15164 1050 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 RFPL1O75677 317 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 AKAP5P24588 427 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 GUCY1A2P33402 732 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 IL10RAQ13651 578 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 PTPAQ15257 358 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 MFSD14BQ5SR56 506 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 LY6G5CQ5SRR4 150 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 ZNF627Q7L945 461 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 ZNF572Q7Z3I7 529 aaPredicted RBP5.21□□□□□ -1.58
USP40-209ENST00000452724 TPH2Q8IWU9 490 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 CHPFQ8IZ52 775 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 FBXO18Q8NFZ0 1043 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 CPT1CQ8TCG5 803 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 CCHCR1Q8TD31 782 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 LENG9Q96B70 501 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 CYFIP2Q96F07 1278 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 CEP95Q96GE4 821 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 TTPALQ9BTX7 342 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 LDAHQ9H6V9 325 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 TDP1Q9NUW8 608 aa5.21□□□□□ -1.58
USP40-209ENST00000452724 EIF2B4Q9UI10 523 aaKnown RBP5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms