RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TMEM189-UBE2V1I3L0A0 370 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 SLC26A4O43511 780 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 TGM5O43548 720 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 GALR2O43603 387 aaPredicted RBP7.78□□□□□ -1.16
VPS41-208ENST00000448833 B4GALT3O60512 393 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 XYLBO75191 536 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 WEE2P0C1S8 567 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 RFX1P22670 979 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 HOXA9P31269 272 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 GBP2P32456 591 aaPredicted RBP7.78□□□□□ -1.16
VPS41-208ENST00000448833 ABCD1P33897 745 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 SMTNP53814 917 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 STRN3Q13033 797 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 DMP1Q13316 513 aaPredicted RBP7.78□□□□□ -1.16
VPS41-208ENST00000448833 RABEP1Q15276 862 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 IER5LQ5T953 404 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 ATF7IP2Q5U623 682 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 FAM171A1Q5VUB5 890 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 LILRA6Q6PI73 481 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.78□□□□□ -1.16
VPS41-208ENST00000448833 TAS1R1Q7RTX1 841 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 PALB2Q86YC2 1186 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 IGSF22Q8N9C0 903 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 PRSS33Q8NF86 280 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 SNX29Q8TEQ0 813 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 PIK3R5Q8WYR1 880 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 ATOH1Q92858 354 aaPredicted RBP7.78□□□□□ -1.16
VPS41-208ENST00000448833 MS4A3Q96HJ5 214 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 TCHPQ9BT92 498 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 CCDC94Q9BW85 323 aaPredicted RBP7.78□□□□□ -1.16
VPS41-208ENST00000448833 GPR62Q9BZJ7 368 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 CCDC113Q9H0I3 377 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 PDZD7Q9H5P4 517 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 GPRC5CQ9NQ84 441 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 DDX19AQ9NUU7 478 aaKnown RBP7.78□□□□□ -1.16
VPS41-208ENST00000448833 SNTG2Q9NY99 539 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 KCND2Q9NZV8 630 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 DUSP12Q9UNI6 340 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 TNFSF13BQ9Y275 285 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 DOCK8Q8NF50 2099 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 CLUHO75153 1309 aa7.78□□□□□ -1.16
VPS41-208ENST00000448833 A0A087WWV3 80 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 CCDC169A6NNP5 214 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 H3BQV1 296 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 WNT7AO00755 349 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 DTNBO60941 627 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 ZMYND10O75800 440 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 RECQL4O94761 1208 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 SEC24BO95487 1268 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 ASGR2P07307 311 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 LIG1P18858 919 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 RPL9P32969 192 aaKnown RBP7.77□□□□□ -1.17
VPS41-208ENST00000448833 PSMD5Q16401 504 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 KYAT1Q16773 422 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 PPM1LQ5SGD2 360 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 ARL6IP4Q66PJ3 421 aaKnown RBP7.77□□□□□ -1.17
VPS41-208ENST00000448833 KANK3Q6NY19 840 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 ANKS3Q6ZW76 656 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 MTSS1LQ765P7 747 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 CDR2LQ86X02 465 aaPredicted RBP7.77□□□□□ -1.17
VPS41-208ENST00000448833 CEP57Q86XR8 500 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 C4orf32Q8N8J7 132 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 BORCS6Q96GS4 357 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 SHDQ96IW2 340 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 CDK5RAP3Q96JB5 506 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 NTPCRQ9BSD7 190 aaKnown RBP7.77□□□□□ -1.17
VPS41-208ENST00000448833 MRPL4Q9BYD3 311 aaKnown RBP7.77□□□□□ -1.17
VPS41-208ENST00000448833 KMT5AQ9NQR1 393 aa7.77□□□□□ -1.17
VPS41-208ENST00000448833 PDCD11Q14690 1871 aaKnown RBP7.77□□□□□ -1.17
VPS41-208ENST00000448833 VWA8A3KMH1 1905 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 CASTOR2A6NHX0 329 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 PROB1E7EW31 1015 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 H7C4K7 107 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 PTGESO14684 152 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 B3GAT3O94766 335 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 BMP15O95972 392 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 POU2F2P09086 479 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 SPATA31D3P0C874 917 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 MCF2P10911 925 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 SRFP11831 508 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 LAMP2P13473 410 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 AOC1P19801 751 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 FGFR3P22607 806 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 FSHRP23945 695 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 ELF1P32519 619 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 GRM5P41594 1212 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 NPTX2P47972 431 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 VCPP55072 806 aaKnown RBP7.76□□□□□ -1.17
VPS41-208ENST00000448833 PEX3P56589 373 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 TCF15Q12870 199 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 RAB33AQ14088 237 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 MCTP1Q6DN14 999 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 SPATA31D4Q6ZUB0 917 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 SLC44A3Q8N4M1 653 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 FLCNQ8NFG4 579 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 LNX1Q8TBB1 728 aaPredicted RBP7.76□□□□□ -1.17
VPS41-208ENST00000448833 AK8Q96MA6 479 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 ACAP3Q96P50 834 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 TSPAN18Q96SJ8 248 aa7.76□□□□□ -1.17
VPS41-208ENST00000448833 ACO2Q99798 780 aaKnown RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms