RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 SPIRE2Q8WWL2 714 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 MFSD14AQ96MC6 490 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 TIPINQ9BVW5 301 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 MRPL4Q9BYD3 311 aaKnown RBP22.79■■□□□ 1.24
SDC1-205ENST00000447124 NT5C3AQ9H0P0 336 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.79■■□□□ 1.24
SDC1-205ENST00000447124 USTQ9Y2C2 406 aa22.79■■□□□ 1.24
SDC1-205ENST00000447124 TRIP11Q15643 1979 aa22.78■■□□□ 1.24
SDC1-205ENST00000447124 SMIM28A0A1B0GU29 152 aa22.78■■□□□ 1.24
SDC1-205ENST00000447124 MEFVO15553 781 aaPredicted RBP22.78■■□□□ 1.24
SDC1-205ENST00000447124 ASGR2P07307 311 aa22.78■■□□□ 1.24
SDC1-205ENST00000447124 PLS3P13797 630 aa22.78■■□□□ 1.24
SDC1-205ENST00000447124 OSTNP61366 133 aa22.78■■□□□ 1.24
SDC1-205ENST00000447124 CACNB1Q02641 598 aaPredicted RBP22.78■■□□□ 1.24
SDC1-205ENST00000447124 C15orf39Q6ZRI6 1047 aa22.78■■□□□ 1.24
SDC1-205ENST00000447124 TMEM161BQ8NDZ6 487 aa22.78■■□□□ 1.24
SDC1-205ENST00000447124 ZNF707Q96C28 371 aaPredicted RBP22.78■■□□□ 1.24
SDC1-205ENST00000447124 CLSTN3Q9BQT9 956 aa22.78■■□□□ 1.24
SDC1-205ENST00000447124 SMOC2Q9H3U7 446 aa22.78■■□□□ 1.24
SDC1-205ENST00000447124 DAXXQ9UER7 740 aaPredicted RBP22.78■■□□□ 1.24
SDC1-205ENST00000447124 SF3B1O75533 1304 aaKnown RBP eCLIP22.78■■□□□ 1.24
SDC1-205ENST00000447124 SPDYE4A6NLX3 237 aa22.77■■□□□ 1.24
SDC1-205ENST00000447124 PAPLNO95428 1278 aa22.77■■□□□ 1.24
SDC1-205ENST00000447124 BRD1O95696 1058 aa22.77■■□□□ 1.24
SDC1-205ENST00000447124 C1RP00736 705 aa22.77■■□□□ 1.24
SDC1-205ENST00000447124 SF3A1Q15459 793 aaKnown RBP22.77■■□□□ 1.24
SDC1-205ENST00000447124 TDRD5Q8NAT2 981 aaKnown RBP22.77■■□□□ 1.24
SDC1-205ENST00000447124 HDAC7Q8WUI4 952 aa22.77■■□□□ 1.24
SDC1-205ENST00000447124 ZMAT2Q96NC0 199 aaKnown RBP22.77■■□□□ 1.24
SDC1-205ENST00000447124 TTPALQ9BTX7 342 aa22.77■■□□□ 1.24
SDC1-205ENST00000447124 BACH2Q9BYV9 841 aa22.77■■□□□ 1.24
SDC1-205ENST00000447124 GOLGA2P5Q9HBQ8 144 aa22.77■■□□□ 1.24
SDC1-205ENST00000447124 BLOC1S4Q9NUP1 217 aa22.77■■□□□ 1.24
SDC1-205ENST00000447124 PLXNA3P51805 1871 aa22.77■■□□□ 1.24
SDC1-205ENST00000447124 ADAM12O43184 909 aa22.76■■□□□ 1.23
SDC1-205ENST00000447124 CLCNKBP51801 687 aa22.76■■□□□ 1.23
SDC1-205ENST00000447124 SOX4Q06945 474 aaPredicted RBP22.76■■□□□ 1.23
SDC1-205ENST00000447124 ZNF568Q3ZCX4 644 aa22.76■■□□□ 1.23
SDC1-205ENST00000447124 DCLRE1AQ6PJP8 1040 aa22.76■■□□□ 1.23
SDC1-205ENST00000447124 BRAPQ7Z569 592 aa22.76■■□□□ 1.23
SDC1-205ENST00000447124 CEP57Q86XR8 500 aa22.76■■□□□ 1.23
SDC1-205ENST00000447124 PLCD3Q8N3E9 789 aa22.76■■□□□ 1.23
SDC1-205ENST00000447124 PIK3R5Q8WYR1 880 aa22.76■■□□□ 1.23
SDC1-205ENST00000447124 CDK5RAP3Q96JB5 506 aa22.76■■□□□ 1.23
SDC1-205ENST00000447124 AK8Q96MA6 479 aa22.76■■□□□ 1.23
SDC1-205ENST00000447124 N4BP1O75113 896 aaKnown RBP22.75■■□□□ 1.23
SDC1-205ENST00000447124 MAPTP10636 758 aaKnown RBP22.75■■□□□ 1.23
SDC1-205ENST00000447124 MCF2P10911 925 aa22.75■■□□□ 1.23
SDC1-205ENST00000447124 UPP1Q16831 310 aa22.75■■□□□ 1.23
SDC1-205ENST00000447124 IER5LQ5T953 404 aa22.75■■□□□ 1.23
SDC1-205ENST00000447124 CCDC149Q6ZUS6 474 aa22.75■■□□□ 1.23
SDC1-205ENST00000447124 APBB1IPQ7Z5R6 666 aaPredicted RBP22.75■■□□□ 1.23
SDC1-205ENST00000447124 TCHPQ9BT92 498 aa22.75■■□□□ 1.23
SDC1-205ENST00000447124 CCDC94Q9BW85 323 aaPredicted RBP22.75■■□□□ 1.23
SDC1-205ENST00000447124 RHOBTB2Q9BYZ6 727 aa22.75■■□□□ 1.23
SDC1-205ENST00000447124 PLEKHA4Q9H4M7 779 aa22.75■■□□□ 1.23
SDC1-205ENST00000447124 WDR6Q9NNW5 1121 aaKnown RBP22.75■■□□□ 1.23
SDC1-205ENST00000447124 SORCS3Q9UPU3 1222 aa22.75■■□□□ 1.23
SDC1-205ENST00000447124 VPS37CA5D8V6 355 aaPredicted RBP22.74■■□□□ 1.23
SDC1-205ENST00000447124 TMEM189-UBE2V1I3L0A0 370 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 SLC26A4O43511 780 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 B3GAT3O94766 335 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 PDGFBP01127 241 aaPredicted RBP22.74■■□□□ 1.23
SDC1-205ENST00000447124 FGFR3P22607 806 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 UBA7P41226 1012 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 MPZL3Q6UWV2 235 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 CYP26C1Q6V0L0 522 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 OTOP3Q7RTS5 596 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 C3orf58Q8NDZ4 430 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 ACAP3Q96P50 834 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 HAPLN2Q9GZV7 340 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 KCND2Q9NZV8 630 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 DPP7Q9UHL4 492 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 KCNG1Q9UIX4 513 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 CLIC4Q9Y696 253 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 C2orf16Q68DN1 1984 aa22.74■■□□□ 1.23
SDC1-205ENST00000447124 MTCL1Q9Y4B5 1905 aaKnown RBP22.73■■□□□ 1.23
SDC1-205ENST00000447124 HARSP12081 509 aaKnown RBP22.73■■□□□ 1.23
SDC1-205ENST00000447124 KCNE1P15382 129 aa22.73■■□□□ 1.23
SDC1-205ENST00000447124 SMTNP53814 917 aa22.73■■□□□ 1.23
SDC1-205ENST00000447124 YARSP54577 528 aaKnown RBP22.73■■□□□ 1.23
SDC1-205ENST00000447124 ELAVL2Q12926 359 aaKnown RBP22.73■■□□□ 1.23
SDC1-205ENST00000447124 DHX8Q14562 1220 aaKnown RBP22.73■■□□□ 1.23
SDC1-205ENST00000447124 MCM6Q14566 821 aa22.73■■□□□ 1.23
SDC1-205ENST00000447124 KARSQ15046 597 aaKnown RBP22.73■■□□□ 1.23
SDC1-205ENST00000447124 PTPAQ15257 358 aa22.73■■□□□ 1.23
SDC1-205ENST00000447124 PSMD5Q16401 504 aa22.73■■□□□ 1.23
SDC1-205ENST00000447124 SEZ6Q53EL9 994 aa22.73■■□□□ 1.23
SDC1-205ENST00000447124 RSPO2Q6UXX9 243 aaPredicted RBP22.73■■□□□ 1.23
SDC1-205ENST00000447124 USP49Q70CQ1 688 aa22.73■■□□□ 1.23
SDC1-205ENST00000447124 FBXL6Q8N531 539 aa22.73■■□□□ 1.23
SDC1-205ENST00000447124 SMG7Q92540 1137 aaKnown RBP22.73■■□□□ 1.23
SDC1-205ENST00000447124 SNX27Q96L92 541 aa22.73■■□□□ 1.23
SDC1-205ENST00000447124 DOCK6Q96HP0 2047 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 I3L4J1 428 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 TOM1L1O75674 476 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 ZMYND10O75800 440 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 BMP15O95972 392 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 PLCG1P19174 1290 aa22.72■■□□□ 1.23
SDC1-205ENST00000447124 SYT1P21579 422 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms