RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 MAPK13O15264 365 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 DNAJC6O75061 913 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 CFAP36Q96G28 342 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 C7orf25Q9BPX7 421 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 POLR3CQ9BUI4 534 aaPredicted RBP9.04□□□□□ -0.96
PTPN3-204ENST00000446349 SELENONQ9NZV5 590 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 FAM50BQ9Y247 325 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 FNDC3AQ9Y2H6 1198 aaKnown RBP9.04□□□□□ -0.96
PTPN3-204ENST00000446349 FAM95CA0A1B0GW59 222 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 BNIP3LO60238 219 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 MFAP3LO75121 409 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 RGS4P49798 205 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 GEMIN4P57678 1058 aaKnown RBP9.04□□□□□ -0.96
PTPN3-204ENST00000446349 CACNB1Q02641 598 aaPredicted RBP9.04□□□□□ -0.96
PTPN3-204ENST00000446349 CREMQ03060 361 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 DDX27Q96GQ7 796 aaKnown RBP9.04□□□□□ -0.96
PTPN3-204ENST00000446349 A0A087WUV0 522 aaPredicted RBP9.04□□□□□ -0.96
PTPN3-204ENST00000446349 POTEMA6NI47 508 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 PIK3R2O00459 728 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 CABYRO75952 493 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 FBXW4P57775 412 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 ABCE1P61221 599 aaKnown RBP9.04□□□□□ -0.96
PTPN3-204ENST00000446349 PPP1R16BQ96T49 567 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 PCDHB12Q9Y5F1 795 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 CREB3O43889 395 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 SPAG6O75602 509 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 CYB5R4Q7L1T6 521 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 MFN1Q8IWA4 741 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 ATP6V0D2Q8N8Y2 350 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 STK33Q9BYT3 514 aa9.04□□□□□ -0.96
PTPN3-204ENST00000446349 C3orf70A6NLC5 250 aaPredicted RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 EXTL3O43909 919 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 HIST1H2AGP0C0S8 130 aaPredicted RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 HIST1H2ADP20671 130 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 GTF2H1P32780 548 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 UGT3A1Q6NUS8 523 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 ADAT2Q7Z6V5 191 aaKnown RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 ATP11CQ8NB49 1132 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 PDCD6IPQ8WUM4 868 aaKnown RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 HIST1H2AHQ96KK5 128 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 HIST1H2AJQ99878 128 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 H2AFJQ9BTM1 129 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 EMILIN2Q9BXX0 1053 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 INTS2Q9H0H0 1204 aaKnown RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 UBQLN1Q9UMX0 589 aaKnown RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 HSPA4LO95757 839 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 CASP2P42575 452 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 GNGT1P63211 74 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 SNX1Q13596 522 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 EMC2Q15006 297 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 BBS9Q3SYG4 887 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 ATF7IP2Q5U623 682 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 EFL1Q7Z2Z2 1120 aaKnown RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 DDX53Q86TM3 631 aaKnown RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 STX18Q9P2W9 335 aaKnown RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 VCLP18206 1134 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 BACE1P56817 501 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 CCDC144BQ3MJ40 725 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 TBC1D1Q86TI0 1168 aaPredicted RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 RFFLQ8WZ73 363 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 SRPK1Q96SB4 655 aaKnown RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 ANGPTL2Q9UKU9 493 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 POTEFA5A3E0 1075 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 POTEIP0CG38 1075 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 PDHBP11177 359 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 NPEPPSP55786 919 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 CYP4F22Q6NT55 531 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 POTEGQ6S5H5 508 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 POTEEQ6S8J3 1075 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 PPWD1Q96BP3 646 aaKnown RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 ZNF512Q96ME7 567 aaPredicted RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 SPON2Q9BUD6 331 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 NUP85Q9BW27 656 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 TNS2Q63HR2 1409 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 TOM1L1O75674 476 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 SLC11A2P49281 568 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 C9orf131Q5VYM1 1079 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 ARMC6Q6NXE6 501 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 GMCL1Q96IK5 515 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 GBP5Q96PP8 586 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 NMRK1Q9NWW6 199 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 RHOBTB3O94955 611 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 PRR29P0C7W0 189 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 BRAFP15056 766 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 FXR2P51116 673 aaKnown RBP eCLIP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 NBPF10Q6P3W6 841 aaKnown RBP9.03□□□□□ -0.96
PTPN3-204ENST00000446349 NBPF15Q8N660 670 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 ATP8A1Q9Y2Q0 1164 aa9.03□□□□□ -0.96
PTPN3-204ENST00000446349 ARHGAP10A1A4S6 786 aa9.02□□□□□ -0.96
PTPN3-204ENST00000446349 CYP2B6P20813 491 aa9.02□□□□□ -0.96
PTPN3-204ENST00000446349 TAF6P49848 677 aa9.02□□□□□ -0.96
PTPN3-204ENST00000446349 PCBP1Q15365 356 aaKnown RBP eCLIP9.02□□□□□ -0.96
PTPN3-204ENST00000446349 NAA35Q5VZE5 725 aa9.02□□□□□ -0.96
PTPN3-204ENST00000446349 OOSP2Q86WS3 158 aa9.02□□□□□ -0.96
PTPN3-204ENST00000446349 MRPL9Q9BYD2 267 aaKnown RBP9.02□□□□□ -0.96
PTPN3-204ENST00000446349 MAF1Q9H063 256 aa9.02□□□□□ -0.96
PTPN3-204ENST00000446349 SNAP25P60880 206 aa9.02□□□□□ -0.96
PTPN3-204ENST00000446349 EPHA10Q5JZY3 1008 aa9.02□□□□□ -0.96
PTPN3-204ENST00000446349 PGBD3Q8N328 593 aa9.02□□□□□ -0.96
PTPN3-204ENST00000446349 GMCL1P1Q8NEA9 526 aa9.02□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms