RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 COBLO75128 1261 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 LRRN2O75325 713 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 DGKIO75912 1065 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 KCNA2P16389 499 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 ADSLP30566 484 aaPredicted RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 HNF4AP41235 474 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 POLE2P56282 527 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 POLR2FP61218 127 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 VAMP2P63027 116 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 MC1RQ01726 317 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 RING1Q06587 406 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 CUL4BQ13620 913 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 GPR68Q15743 365 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 EXOSC6Q5RKV6 272 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 ATPAF1Q5TC12 328 aaPredicted RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 NAA16Q6N069 864 aaPredicted RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 ESRP1Q6NXG1 681 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 CNKSR3Q6P9H4 555 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 SLC22A25Q6T423 547 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 MCM10Q7L590 875 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 RASGRP2Q7LDG7 609 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 NLGN4XQ8N0W4 816 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 C12orf50Q8NA57 414 aaPredicted RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 PCSK9Q8NBP7 692 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 ZMIZ2Q8NF64 920 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 RAB24Q969Q5 203 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 CENPTQ96BT3 561 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 GPATCH1Q9BRR8 931 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 MYL10Q9BUA6 226 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 COLEC11Q9BWP8 271 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 CDADC1Q9BWV3 514 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 ARHGAP39Q9C0H5 1083 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 KIAA1683Q9H0B3 1180 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 INCENPQ9NQS7 918 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 CRIM1Q9NZV1 1036 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 FRRS1LQ9P0K9 344 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 DSEQ9UL01 958 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 TRIM17Q9Y577 477 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 PCDHA1Q9Y5I3 950 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 CC2D2AQ9P2K1 1620 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 PRSS38A1L453 326 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 FAM234BA2RU67 622 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 LRRC14BA6NHZ5 514 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 ZNF561-AS1K7EIQ3 104 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 DVL2O14641 736 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 WNT9AO14904 365 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 SIN3BO75182 1162 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 URI1O94763 535 aaPredicted RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 NDST3O95803 873 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 ANXA2P07355 339 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 PORP16435 677 aaPredicted RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 MC4RP32245 332 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 NNMTP40261 264 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 PEX19P40855 299 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 LMAN1P49257 510 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 AFF1P51825 1210 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 EVCP57679 992 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 BPIFB3P59826 476 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 CTBSQ01459 385 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 MPP3Q13368 585 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 EIF4A2Q14240 407 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 HHIPL2Q6UWX4 724 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 UBE3DQ7Z6J8 389 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 RPAP2Q8IXW5 612 aaPredicted RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 NGEFQ8N5V2 710 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 TEX9Q8N6V9 391 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 OR6B3Q8NGW1 331 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 PLBD2Q8NHP8 589 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 GOT1L1Q8NHS2 421 aaPredicted RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 MAK16Q9BXY0 300 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 MKNK2Q9HBH9 465 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 XAB2Q9HCS7 855 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 ZNF212Q9UDV6 495 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 HERC5Q9UII4 1024 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 GTF3C4Q9UKN8 822 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 TBX20Q9UMR3 447 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 PA2G4Q9UQ80 394 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 CAMK2AQ9UQM7 478 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 KIF7Q2M1P5 1343 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 BICRAQ9NZM4 1560 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 ASNA1O43681 348 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 GDF9O60383 454 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 RASSF9O75901 435 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 USP1O94782 785 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 CBX7O95931 251 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 AFPP02771 609 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 ZNF865P0CJ78 1059 aaPredicted RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 PER3P56645 1201 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 RPS16P62249 146 aaKnown RBP2.58□□□□□ -2
CCDC88A-208ENST00000444458 CYP4F3Q08477 520 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 NOGQ13253 232 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 TUSC3Q13454 348 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 BECN1Q14457 450 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 EPHA7Q15375 998 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 DUOXA2Q1HG44 320 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 PKDCCQ504Y2 493 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 BORAQ6PGQ7 559 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 CNSTQ6PJW8 725 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 RRAGAQ7L523 313 aa2.58□□□□□ -2
CCDC88A-208ENST00000444458 KCNK18Q7Z418 384 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms