RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ASB7Q9H672 318 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 CBX8Q9HC52 389 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 METTL14Q9HCE5 456 aaKnown RBP17.15■□□□□ 0.34
USP40-206ENST00000443711 KLK14Q9P0G3 267 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 CXXC1Q9P0U4 656 aaPredicted RBP17.15■□□□□ 0.34
USP40-206ENST00000443711 ANK1P16157 1881 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 PTPRSQ13332 1948 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 TTC26A0AVF1 554 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 MEIS3P2A8K0S8 358 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 LACTBL1A8MY62 500 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 OFD1O75665 1012 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 FGFR1P11362 822 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 KRT13P13646 458 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 BMP8BP34820 402 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 PSMD6Q15008 389 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 IQCB1Q15051 598 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 SHHQ15465 462 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 CCDC40Q4G0X9 1142 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 C9orf50Q5SZB4 431 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 ALKAL1Q6UXT8 129 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 INTS8Q75QN2 995 aaKnown RBP17.14■□□□□ 0.33
USP40-206ENST00000443711 FRMD5Q7Z6J6 570 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 USP37Q86T82 979 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 ABI1Q8IZP0 508 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 TMC2Q8TDI7 906 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 RNPC3Q96LT9 517 aaKnown RBP17.14■□□□□ 0.33
USP40-206ENST00000443711 RPS6KC1Q96S38 1066 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 TSPAN18Q96SJ8 248 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 GAD1Q99259 594 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 RNF19AQ9NV58 838 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 FANCLQ9NW38 375 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 RALGAPA2Q2PPJ7 1873 aa17.14■□□□□ 0.33
USP40-206ENST00000443711 ARL5CA6NH57 179 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 TULP1O00294 542 aaPredicted RBP17.13■□□□□ 0.33
USP40-206ENST00000443711 INPPL1O15357 1258 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 DGKIO75912 1065 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 MLH1P40692 756 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 ENPEPQ07075 957 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 NCAPHQ15003 741 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 XKR4Q5GH76 650 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 CLLU1OSQ5K130 101 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 DHX40Q8IX18 779 aaKnown RBP17.13■□□□□ 0.33
USP40-206ENST00000443711 URGCPQ8TCY9 931 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 HELQQ8TDG4 1101 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 BORCS6Q96GS4 357 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 FNBP1Q96RU3 617 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 ZBED2Q9BTP6 218 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 TMEM117Q9H0C3 514 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 PDE11AQ9HCR9 933 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 SAMSN1Q9NSI8 373 aaKnown RBP17.13■□□□□ 0.33
USP40-206ENST00000443711 CNTN3Q9P232 1028 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 KANSL3Q9P2N6 904 aa17.13■□□□□ 0.33
USP40-206ENST00000443711 MAGEC2Q9UBF1 373 aaPredicted RBP17.13■□□□□ 0.33
USP40-206ENST00000443711 ARMCX3Q9UH62 379 aaPredicted RBP17.13■□□□□ 0.33
USP40-206ENST00000443711 FNDC1Q4ZHG4 1894 aaPredicted RBP17.13■□□□□ 0.33
USP40-206ENST00000443711 TDRD15B5MCY1 1934 aaKnown RBP17.13■□□□□ 0.33
USP40-206ENST00000443711 PDCD11Q14690 1871 aaKnown RBP17.12■□□□□ 0.33
USP40-206ENST00000443711 MEFVO15553 781 aaPredicted RBP17.12■□□□□ 0.33
USP40-206ENST00000443711 KCNE1P15382 129 aa17.12■□□□□ 0.33
USP40-206ENST00000443711 ATP2A2P16615 1042 aaKnown RBP17.12■□□□□ 0.33
USP40-206ENST00000443711 VAMP7P51809 220 aa17.12■□□□□ 0.33
USP40-206ENST00000443711 MARSP56192 900 aaKnown RBP17.12■□□□□ 0.33
USP40-206ENST00000443711 TPM4P67936 248 aa17.12■□□□□ 0.33
USP40-206ENST00000443711 NOMO2Q5JPE7 1267 aa17.12■□□□□ 0.33
USP40-206ENST00000443711 FAM117BQ6P1L5 589 aa17.12■□□□□ 0.33
USP40-206ENST00000443711 NT5DC4Q86YG4 428 aa17.12■□□□□ 0.33
USP40-206ENST00000443711 IRF2BP1Q8IU81 584 aa17.12■□□□□ 0.33
USP40-206ENST00000443711 CREBRFQ8IUR6 639 aa17.12■□□□□ 0.33
USP40-206ENST00000443711 PARD3BQ8TEW8 1205 aa17.12■□□□□ 0.33
USP40-206ENST00000443711 CCDC127Q96BQ5 260 aa17.12■□□□□ 0.33
USP40-206ENST00000443711 CNOT6LQ96LI5 555 aaKnown RBP17.12■□□□□ 0.33
USP40-206ENST00000443711 ZFP42Q96MM3 310 aa17.12■□□□□ 0.33
USP40-206ENST00000443711 INPP5FQ9Y2H2 1132 aa17.12■□□□□ 0.33
USP40-206ENST00000443711 DERAQ9Y315 318 aa17.12■□□□□ 0.33
USP40-206ENST00000443711 SMIM28A0A1B0GU29 152 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 TBKBP1A7MCY6 615 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 GOLGA6L19H0YKK7 550 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 GJB5O95377 273 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 THP07101 528 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 MCCD1P59942 119 aaPredicted RBP17.11■□□□□ 0.33
USP40-206ENST00000443711 BFSP1Q12934 665 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 CDKAL1Q5VV42 579 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 JADE1Q6IE81 842 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 TMCO2Q7Z6W1 182 aaPredicted RBP17.11■□□□□ 0.33
USP40-206ENST00000443711 LUZP1Q86V48 1076 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 HERC6Q8IVU3 1022 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 CACTINQ8WUQ7 758 aaKnown RBP17.11■□□□□ 0.33
USP40-206ENST00000443711 KIF12Q96FN5 646 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 CASD1Q96PB1 797 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 MRPL9Q9BYD2 267 aaKnown RBP17.11■□□□□ 0.33
USP40-206ENST00000443711 CXCL16Q9H2A7 254 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 MIOSQ9NXC5 875 aa17.11■□□□□ 0.33
USP40-206ENST00000443711 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.11■□□□□ 0.33
USP40-206ENST00000443711 KCNJ18B7U540 433 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 PTGESO14684 152 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 TNRC18O15417 2968 aaPredicted RBP17.1■□□□□ 0.33
USP40-206ENST00000443711 XPOTO43592 962 aaKnown RBP17.1■□□□□ 0.33
USP40-206ENST00000443711 STX10O60499 249 aa17.1■□□□□ 0.33
USP40-206ENST00000443711 DLATP10515 647 aaKnown RBP17.1■□□□□ 0.33
USP40-206ENST00000443711 TNNI1P19237 187 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms