RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 FUT10Q6P4F1 479 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 PPFIBP1Q86W92 1011 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 RABGGTAQ92696 567 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 CXCL16Q9H2A7 254 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 ADAM28Q9UKQ2 775 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 HCFC2Q9Y5Z7 792 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 BDP1A6H8Y1 2624 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 C2CD2LO14523 706 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 HOXB8P17481 243 aaPredicted RBP16.61■□□□□ 0.25
LIMS3-201ENST00000437679 GLUD2P49448 558 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 GTF2BQ00403 316 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 MCL1Q07820 350 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 NAB2Q15742 525 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 SMAD2Q15796 467 aaKnown RBP16.61■□□□□ 0.25
LIMS3-201ENST00000437679 ANKRD54Q6NXT1 300 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 SHC4Q6S5L8 630 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 SFR1Q86XK3 245 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 SMRP1Q8NCR6 262 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 PPP1R10Q96QC0 940 aaKnown RBP16.61■□□□□ 0.25
LIMS3-201ENST00000437679 FIZ1Q96SL8 496 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 PAAF1Q9BRP4 392 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 LRRC27Q9C0I9 530 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 CUEDC2Q9H467 287 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 SLC38A7Q9NVC3 462 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 CACNG4Q9UBN1 327 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 SEL1LQ9UBV2 794 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 PRKAG3Q9UGI9 489 aa16.61■□□□□ 0.25
LIMS3-201ENST00000437679 SMIM28A0A1B0GU29 152 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 LILRB3O75022 631 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 EFEMP2O95967 443 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 PIGRP01833 764 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 IDEP14735 1019 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 KLRC2P26717 231 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 KYAT1Q16773 422 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 USP41Q3LFD5 358 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 XKR4Q5GH76 650 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 AXDND1Q5T1B0 1012 aaPredicted RBP16.6■□□□□ 0.25
LIMS3-201ENST00000437679 ALKAL1Q6UXT8 129 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 TAS1R1Q7RTX1 841 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 MAP4K3Q8IVH8 894 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 RNF168Q8IYW5 571 aaPredicted RBP16.6■□□□□ 0.25
LIMS3-201ENST00000437679 IQUBQ8NA54 791 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 DHX58Q96C10 678 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 DNAJC19Q96DA6 116 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 SNX27Q96L92 541 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 UROC1Q96N76 676 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 KLHL5Q96PQ7 755 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 GPR62Q9BZJ7 368 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 TNMDQ9H2S6 317 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 ST6GALNAC4Q9H4F1 302 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 MRPL44Q9H9J2 332 aaKnown RBP16.6■□□□□ 0.25
LIMS3-201ENST00000437679 FAM13BQ9NYF5 915 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 RCOR1Q9UKL0 485 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 PCDHA7Q9UN72 937 aa16.6■□□□□ 0.25
LIMS3-201ENST00000437679 SF3B1O75533 1304 aaKnown RBP eCLIP16.6■□□□□ 0.25
LIMS3-201ENST00000437679 KIF4AO95239 1232 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 CLTAP09496 248 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 CNPP09543 421 aaKnown RBP16.59■□□□□ 0.25
LIMS3-201ENST00000437679 SSTR3P32745 418 aaPredicted RBP16.59■□□□□ 0.25
LIMS3-201ENST00000437679 AMPD3Q01432 767 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 DSG1Q02413 1049 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 ELAVL2Q12926 359 aaKnown RBP16.59■□□□□ 0.25
LIMS3-201ENST00000437679 TPRNQ4KMQ1 711 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 SEZ6Q53EL9 994 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 ZC2HC1CQ53FD0 456 aaPredicted RBP16.59■□□□□ 0.25
LIMS3-201ENST00000437679 HERC4Q5GLZ8 1057 aaPredicted RBP16.59■□□□□ 0.25
LIMS3-201ENST00000437679 KIAA0319Q5VV43 1072 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 DCLRE1AQ6PJP8 1040 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 ZNF720Q7Z2F6 126 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 HASPINQ8TF76 798 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 HVCN1Q96D96 273 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 CHST7Q9NS84 486 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 PANK4Q9NVE7 773 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 DZANK1Q9NVP4 752 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 CNTN3Q9P232 1028 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 USP15Q9Y4E8 981 aaPredicted RBP16.59■□□□□ 0.25
LIMS3-201ENST00000437679 ATP6V1DQ9Y5K8 247 aa16.59■□□□□ 0.25
LIMS3-201ENST00000437679 ADH1AP07327 375 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 KCNE1P15382 129 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 EPCAMP16422 314 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 KRT85P78386 507 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 CREMQ03060 361 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 E2F4Q16254 413 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 SYCE2Q6PIF2 218 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 ADHFE1Q8IWW8 467 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 CCDC65Q8IXS2 484 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 GPR65Q8IYL9 337 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 GJD3Q8N144 294 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 SLC22A17Q8WUG5 538 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 RIN2Q8WYP3 895 aaPredicted RBP16.58■□□□□ 0.24
LIMS3-201ENST00000437679 STAMQ92783 540 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 DDX27Q96GQ7 796 aaKnown RBP16.58■□□□□ 0.24
LIMS3-201ENST00000437679 POP1Q99575 1024 aaKnown RBP16.58■□□□□ 0.24
LIMS3-201ENST00000437679 MSTO1Q9BUK6 570 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 APOL5Q9BWW9 433 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 HAPLN2Q9GZV7 340 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 PLEKHA5Q9HAU0 1116 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 RXFP1Q9HBX9 757 aa16.58■□□□□ 0.24
LIMS3-201ENST00000437679 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.58■□□□□ 0.24
LIMS3-201ENST00000437679 TBC1D7Q9P0N9 293 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms