RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 PROB1E7EW31 1015 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 USO1O60763 962 aaKnown RBP13.34□□□□□ -0.27
PTPRF-208ENST00000437607 LILRB3O75022 631 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 SKIP12755 728 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 IDEP14735 1019 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 CYP11B2P19099 503 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 CASP1P29466 404 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 RARRES1P49788 294 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 NPEPPSP55786 919 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 ZNF445P59923 1031 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 TYRO3Q06418 890 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 CUL4BQ13620 913 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 GIT2Q14161 759 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 XKR9Q5GH70 373 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 ATAT1Q5SQI0 421 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 UBXN11Q5T124 520 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 TMC5Q6UXY8 1006 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 MRPL10Q7Z7H8 261 aaKnown RBP13.34□□□□□ -0.27
PTPRF-208ENST00000437607 SYT2Q8N9I0 419 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-208ENST00000437607 TRIML1Q8N9V2 468 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 DDX12PQ92771 950 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 KLHL5Q96PQ7 755 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 C7orf25Q9BPX7 421 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 INO80BQ9C086 356 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-208ENST00000437607 CYP26B1Q9NR63 512 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 USTQ9Y2C2 406 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 PCDHB2Q9Y5E7 798 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 PCDHA5Q9Y5H7 936 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 NOTCH4Q99466 2003 aa13.34□□□□□ -0.27
PTPRF-208ENST00000437607 MYMKA6NI61 221 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 BIN1O00499 593 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 RPN1P04843 607 aaKnown RBP13.33□□□□□ -0.28
PTPRF-208ENST00000437607 XRCC6P12956 609 aaKnown RBP eCLIP13.33□□□□□ -0.28
PTPRF-208ENST00000437607 HOXA11P31270 313 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-208ENST00000437607 RAB27AP51159 221 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 CLCN4P51793 760 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 RNASELQ05823 741 aaKnown RBP13.33□□□□□ -0.28
PTPRF-208ENST00000437607 BMS1Q14692 1282 aaKnown RBP13.33□□□□□ -0.28
PTPRF-208ENST00000437607 CWF19L1Q69YN2 538 aaKnown RBP13.33□□□□□ -0.28
PTPRF-208ENST00000437607 LRSAM1Q6UWE0 723 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 DYMQ7RTS9 669 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 ASCL5Q7RTU5 278 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 GPR149Q86SP6 731 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 CCDC65Q8IXS2 484 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 PLCD3Q8N3E9 789 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 CEP170P1Q96L14 293 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 SNX27Q96L92 541 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 GSDMAQ96QA5 445 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 MTRQ99707 1265 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 RUSC1Q9BVN2 902 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 IRF2BPLQ9H1B7 796 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 TSPY26PQ9H489 355 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 DHX33Q9H6R0 707 aaKnown RBP13.33□□□□□ -0.28
PTPRF-208ENST00000437607 ANO10Q9NW15 660 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 PPME1Q9Y570 386 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 COL4A3BPQ9Y5P4 624 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 GVINP1Q7Z2Y8 2422 aa13.33□□□□□ -0.28
PTPRF-208ENST00000437607 A0A087WWV3 80 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 NRP1O14786 923 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 FAM13AO94988 1023 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 CNPP09543 421 aaKnown RBP13.32□□□□□ -0.28
PTPRF-208ENST00000437607 NPR3P17342 541 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 NT5DC1Q5TFE4 455 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 ASTLQ6HA08 431 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-208ENST00000437607 CNNM4Q6P4Q7 775 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 PADI6Q6TGC4 694 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 UNC13DQ70J99 1090 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 PRPF31Q8WWY3 499 aaKnown RBP13.32□□□□□ -0.28
PTPRF-208ENST00000437607 TMEM143Q96AN5 459 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 PGBD4Q96DM1 585 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 REEP2Q9BRK0 252 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 TIPINQ9BVW5 301 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 GTPBP4Q9BZE4 634 aaKnown RBP13.32□□□□□ -0.28
PTPRF-208ENST00000437607 ZHX3Q9H4I2 956 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 SFXN1Q9H9B4 322 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 RSAD1Q9HA92 442 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 MARCH5Q9NX47 278 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 DACH1Q9UI36 760 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 MAN1B1Q9UKM7 699 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 ODF2LQ9ULJ1 636 aa13.32□□□□□ -0.28
PTPRF-208ENST00000437607 CACNA1IQ9P0X4 2223 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 DNAH14Q0VDD8 3507 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 PVALEFA0A1B0GWK0 134 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 CARNS1A5YM72 827 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 ZBTB39O15060 712 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 N4BP1O75113 896 aaKnown RBP13.31□□□□□ -0.28
PTPRF-208ENST00000437607 DGAT1O75907 488 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 EFEMP2O95967 443 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 SRGAP2CP0DJJ0 459 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 GUCY2CP25092 1073 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 RFC5P40937 340 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 NBL1P41271 181 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 CACNB1Q02641 598 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-208ENST00000437607 RAD51AP2Q09MP3 1159 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 LAMTOR4Q0VGL1 99 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 KCNB1Q14721 858 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 RINT1Q6NUQ1 792 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 TAS1R1Q7RTX1 841 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 SRGAP1Q7Z6B7 1085 aa13.31□□□□□ -0.28
PTPRF-208ENST00000437607 PPFIBP1Q86W92 1011 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms