RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 ZFYVE28Q9HCC9 887 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 MLXIPLQ9NP71 852 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 DIP2BQ9P265 1576 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 FLT1P17948 1338 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 A0A087WUV0 522 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 GYG2O15488 501 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 SYCP2LQ5T4T6 812 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 TMEM143Q96AN5 459 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 TGS1Q96RS0 853 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 EIF2AQ9BY44 585 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 TADA3O75528 432 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 TRIM49P0CI25 452 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 TRIM49CP0CI26 452 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 IER5Q5VY09 327 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 NAF1Q96HR8 494 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 TMEM60Q9H2L4 133 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 STX18Q9P2W9 335 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 PCDHA10Q9Y5I2 948 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 WDR19Q8NEZ3 1342 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 ZFXP17010 805 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 DDX5P17844 614 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 TAP1Q03518 808 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 NOVA2Q9UNW9 492 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 EFCAB14O75071 495 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 FTLP02792 175 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 ORC2Q13416 577 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 TMED1Q13445 227 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 HIF1AQ16665 826 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 NFRKBQ6P4R8 1299 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 ADCK2Q7Z695 626 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 WNT8AQ9H1J5 351 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 SCOCQ9UIL1 159 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 SH3BP1Q9Y3L3 701 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 F5H6K3 240 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 ASAP2O43150 1006 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 KLRC3Q07444 240 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 C16orf87Q6PH81 154 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 DGKDQ16760 1214 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 CEP55Q53EZ4 464 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 SDE2Q6IQ49 451 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 RNF25Q96BH1 459 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 PITPNM3Q9BZ71 974 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 DDHD2O94830 711 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 CELF2O95319 508 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 TEX13BQ9BXU2 312 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 MIF4GDA9UHW6 222 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 PRKCBP05771 671 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 DACH2Q96NX9 599 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 SLC38A7Q9NVC3 462 aa12.73□□□□□ -0.37
CCDC88A-207ENST00000436346 CPS1P31327 1500 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 BEND6Q5SZJ8 279 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 ZNF579Q8NAF0 562 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 INO80Q9ULG1 1556 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 DIP2CQ9Y2E4 1556 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 ICE1Q9Y2F5 2266 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 PRR36Q9H6K5 1346 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 ASMTLO95671 621 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 CDKL3Q8IVW4 592 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 ZCWPW1Q9H0M4 648 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 KRT87PA6NCN2 255 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 CCDC157Q569K6 752 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 PPM1NQ8N819 430 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 LPAR1Q92633 364 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 DAB2P98082 770 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 NUGGCQ68CJ6 796 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 MCEEQ96PE7 176 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 MAD2L2Q9UI95 211 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 SLC25A13Q9UJS0 675 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 PHLPP1O60346 1717 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 ZNF500O60304 480 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 P4HBP07237 508 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 LDHDQ86WU2 507 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 C5orf58C9J3I9 102 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 KCNQ2O43526 872 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 KCNA2P16389 499 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 ALDH1A3P47895 512 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 ARSEP51690 589 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 USP11P51784 963 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 SNX17Q15036 470 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 EPHA10Q5JZY3 1008 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 ZFATQ9P243 1243 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 DCTN4Q9UJW0 460 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 TOB2Q14106 344 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 WDR72Q3MJ13 1102 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 SNX31Q8N9S9 440 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 ATP11CQ8NB49 1132 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 SCFD1Q8WVM8 642 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 INTS2Q9H0H0 1204 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 SMARCAD1Q9H4L7 1026 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 MEFVO15553 781 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 RALBP11234 206 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 ASAP3Q8TDY4 903 aa12.72□□□□□ -0.37
CCDC88A-207ENST00000436346 CYP19A1P11511 503 aaPredicted RBP12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 STAT5BP51692 787 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 TFDP2Q14188 446 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 COG2Q14746 738 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 PCSK7Q16549 785 aa12.71□□□□□ -0.37
CCDC88A-207ENST00000436346 CATSPER3Q86XQ3 398 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms