RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 RAVER2Q9HCJ3 691 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 DMAP1Q9NPF5 467 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 DIABLOQ9NR28 239 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 RNF146Q9NTX7 359 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 CEP72Q9P209 647 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 TSR3Q9UJK0 312 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ZFP69BQ9UJL9 534 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 HPGDP15428 266 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 LAMC2Q13753 1193 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ZNF394Q53GI3 561 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 PTRHD1Q6GMV3 140 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 PIGOQ8TEQ8 1089 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 PDE11AQ9HCR9 933 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 KLHL11Q9NVR0 708 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 HACL1Q9UJ83 578 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 TMEM2Q9UHN6 1383 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 MOCS2O96007 188 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 P4HBP07237 508 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 KITP10721 976 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 CCNE1P24864 410 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 CXCR5P32302 372 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 EIF4A3P38919 411 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 RANBP1P43487 201 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ACADSBP45954 432 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 DYNLL1P63167 89 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 GPS1Q13098 491 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 NLRP10Q86W26 655 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 HOMEZQ8IX15 550 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ATP11CQ8NB49 1132 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 LATS2Q9NRM7 1088 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 MAN1B1Q9UKM7 699 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 OVOS2A0A0G2JMS6 1433 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 OVOS2A0A0J9YW53 1432 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 PTPRKQ15262 1439 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ARHGAP31Q2M1Z3 1444 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 OVOS2Q6IE36 1432 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ATP7BP35670 1465 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ZMYND10O75800 440 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 IL18RAPO95256 599 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 SLCO1A2P46721 670 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 SULT1E1P49888 294 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 CNTN1Q12860 1018 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 TAF1CQ15572 869 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 CYP4A22Q5TCH4 519 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 SWSAP1Q6NVH7 229 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 EFL1Q7Z2Z2 1120 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 GPD1LQ8N335 351 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 DEPDC7Q96QD5 511 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 CYTH2Q99418 400 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ARMC7Q9H6L4 198 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 GABBR1Q9UBS5 961 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 FBXL5Q9UKA1 691 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 PALLDQ8WX93 1383 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 C16orf96A6NNT2 1141 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 M0R3G1 203 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 DDHD2O94830 711 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 MMEP08473 750 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 RPSAP08865 295 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 NR1D1P20393 614 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ST13P50502 369 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 TKFCQ3LXA3 575 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ERAP2Q6P179 960 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ZC3H18Q86VM9 953 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 HORMAD1Q86X24 394 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ARMC2Q8NEN0 867 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 RASGRP4Q8TDF6 673 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 NPHP4O75161 1426 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 HECW2Q9P2P5 1572 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 H0YC42 278 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 NR3C1P04150 777 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 TYK2P29597 1187 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 ATXN3P54252 364 aaPredicted RBP7.21□□□□□ -1.25
SCN1A-204ENST00000423058 FGD2Q7Z6J4 655 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 RHOT1Q8IXI2 618 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 DCP1BQ8IZD4 617 aaKnown RBP7.21□□□□□ -1.25
SCN1A-204ENST00000423058 GFM2Q969S9 779 aaKnown RBP7.21□□□□□ -1.25
SCN1A-204ENST00000423058 ASAP1Q9ULH1 1129 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 CHMP2BQ9UQN3 213 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 PZPP20742 1482 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 MEFVO15553 781 aaPredicted RBP7.21□□□□□ -1.25
SCN1A-204ENST00000423058 SYNCRIPO60506 623 aaKnown RBP7.21□□□□□ -1.25
SCN1A-204ENST00000423058 FGGP02679 453 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 ATP6V1C1P21283 382 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 FCGRTP55899 365 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 RUNX1T1Q06455 604 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 ANGPT1Q15389 498 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 TDRD10Q5VZ19 366 aaKnown RBP7.21□□□□□ -1.25
SCN1A-204ENST00000423058 PCYOX1LQ8NBM8 494 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 RIN2Q8WYP3 895 aaPredicted RBP7.21□□□□□ -1.25
SCN1A-204ENST00000423058 GPR63Q9BZJ6 419 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.21□□□□□ -1.25
SCN1A-204ENST00000423058 FHOD1Q9Y613 1164 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 FLT1P17948 1338 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 KDM6AO15550 1401 aaPredicted RBP7.21□□□□□ -1.25
SCN1A-204ENST00000423058 CYTH3O43739 400 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 RBP5P82980 135 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 CSTF3Q12996 717 aaKnown RBP7.21□□□□□ -1.25
SCN1A-204ENST00000423058 ZNF827Q17R98 1081 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 TTLL9Q3SXZ7 439 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 CCDC157Q569K6 752 aa7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms