RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 ING5Q8WYH8 240 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 FGF13Q92913 245 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 KXD1Q9BQD3 176 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 PLA2G2FQ9BZM2 168 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 GOLGA2P5Q9HBQ8 144 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.96□□□□□ -0.98
VIM-202ENST00000421459 DNMT3BQ9UBC3 853 aaKnown RBP8.96□□□□□ -0.98
VIM-202ENST00000421459 FBXW11Q9UKB1 542 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 CDH7Q9ULB5 785 aa8.96□□□□□ -0.98
VIM-202ENST00000421459 SF3B1O75533 1304 aaKnown RBP eCLIP8.96□□□□□ -0.98
VIM-202ENST00000421459 MED19A0JLT2 244 aaPredicted RBP8.95□□□□□ -0.98
VIM-202ENST00000421459 EPB41L2O43491 1005 aaKnown RBP8.95□□□□□ -0.98
VIM-202ENST00000421459 PRKCBP05771 671 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 THP07101 528 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 TKTP29401 623 aaKnown RBP8.95□□□□□ -0.98
VIM-202ENST00000421459 BRCC3P46736 316 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 CLCNKBP51801 687 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 STARD6P59095 220 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 PRPF4BQ13523 1007 aaKnown RBP8.95□□□□□ -0.98
VIM-202ENST00000421459 ZNF174Q15697 407 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 SLC44A4Q53GD3 710 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 AXDND1Q5T1B0 1012 aaPredicted RBP8.95□□□□□ -0.98
VIM-202ENST00000421459 NT5DC1Q5TFE4 455 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 CDCA2Q69YH5 1023 aaPredicted RBP8.95□□□□□ -0.98
VIM-202ENST00000421459 PHLDB3Q6NSJ2 640 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 PPP4R3CPQ6ZMV5 832 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 C3orf58Q8NDZ4 430 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 PJA1Q8NG27 643 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 PIK3R5Q8WYR1 880 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 GTF3C6Q969F1 213 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 NXPE3Q969Y0 559 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 MCRS1Q96EZ8 462 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 CCDC113Q9H0I3 377 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 BRMS1Q9HCU9 246 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 SLC2A4RGQ9NR83 387 aa8.95□□□□□ -0.98
VIM-202ENST00000421459 PRMT7Q9NVM4 692 aaPredicted RBP8.95□□□□□ -0.98
VIM-202ENST00000421459 FAM170BA6NMN3 283 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 N4BP3O15049 544 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 OSTNP61366 133 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 FOXK2Q01167 660 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 SOX4Q06945 474 aaPredicted RBP8.94□□□□□ -0.98
VIM-202ENST00000421459 NBR1Q14596 966 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 UBXN2BQ14CS0 331 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 FAM187BQ17R55 369 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 SLC5A9Q2M3M2 681 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 LIN9Q5TKA1 542 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 TSSK4Q6SA08 328 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 PADI6Q6TGC4 694 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 ERMP1Q7Z2K6 904 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 ZBTB8OSQ8IWT0 167 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 NPAS3Q8IXF0 933 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 GPR65Q8IYL9 337 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 CEP120Q8N960 986 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 WASF1Q92558 559 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 HINFPQ9BQA5 517 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 CDY1Q9Y6F8 540 aa8.94□□□□□ -0.98
VIM-202ENST00000421459 KANSL1LA0AUZ9 987 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 ARHGEF35A5YM69 484 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 SHISA7A6NL88 538 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 ACKR2O00590 384 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 B3GAT3O94766 335 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 C1RP00736 705 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 HNRNPA1P09651 372 aaKnown RBP eCLIP8.93□□□□□ -0.98
VIM-202ENST00000421459 XRCC6P12956 609 aaKnown RBP eCLIP8.93□□□□□ -0.98
VIM-202ENST00000421459 CEBPBP17676 345 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 CYP11B2P19099 503 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 FGFR3P22607 806 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 ARPP19P56211 112 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 CREMQ03060 361 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 CSTF1Q05048 431 aaKnown RBP8.93□□□□□ -0.98
VIM-202ENST00000421459 RAB33AQ14088 237 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 MLF2Q15773 248 aaPredicted RBP8.93□□□□□ -0.98
VIM-202ENST00000421459 MAPK6Q16659 721 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 TANGO2Q6ICL3 276 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 SUMF1Q8NBK3 374 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 MCPH1Q8NEM0 835 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 DEPTORQ8TB45 409 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 TCEAL4Q96EI5 215 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 DDX27Q96GQ7 796 aaKnown RBP8.93□□□□□ -0.98
VIM-202ENST00000421459 PRIMPOLQ96LW4 560 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 PPP1R10Q96QC0 940 aaKnown RBP8.93□□□□□ -0.98
VIM-202ENST00000421459 NACC1Q96RE7 527 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 POLR3CQ9BUI4 534 aaPredicted RBP8.93□□□□□ -0.98
VIM-202ENST00000421459 DDX23Q9BUQ8 820 aaKnown RBP8.93□□□□□ -0.98
VIM-202ENST00000421459 C2orf40Q9H1Z8 148 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 TUFT1Q9NNX1 390 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 SPATA6Q9NWH7 488 aaPredicted RBP8.93□□□□□ -0.98
VIM-202ENST00000421459 ARID2Q68CP9 1835 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 ZNF292O60281 2723 aa8.93□□□□□ -0.98
VIM-202ENST00000421459 SPTBN4Q9H254 2564 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 SMIM28A0A1B0GU29 152 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 MEFVO15553 781 aaPredicted RBP8.92□□□□□ -0.98
VIM-202ENST00000421459 XYLBO75191 536 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 SEC24AO95486 1093 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 RHOP08100 348 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 TARSP26639 723 aaKnown RBP8.92□□□□□ -0.98
VIM-202ENST00000421459 NAMPTP43490 491 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 NEK4P51957 841 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 TRIM29Q14134 588 aa8.92□□□□□ -0.98
VIM-202ENST00000421459 GRM2Q14416 872 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms