RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 LEFTY2O00292 366 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 ADAMTS3O15072 1205 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 HNRNPRO43390 633 aaKnown RBP-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 PEX1O43933 1283 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 ZMYND10O75800 440 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 UBOX5O94941 541 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 CD3EP07766 207 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 MAPK10P53779 464 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 DSCR9P59020 149 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 RAD51AP2Q09MP3 1159 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 WSCD2Q2TBF2 565 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 KRTAP20-1Q3LI63 56 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 PDCD4Q53EL6 469 aaKnown RBP-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 SERTAD4-AS1Q5TG53 156 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 PRAMEF17Q5VTA0 474 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 TTC19Q6DKK2 380 aaPredicted RBP-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 TRIM65Q6PJ69 517 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 TPTE2Q6XPS3 522 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 DCUN1D3Q8IWE4 304 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 TTLL11Q8NHH1 800 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 KIR2DL5BQ8NHK3 375 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 HAPLN3Q96S86 360 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 MKNK1Q9BUB5 465 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 MYLK2Q9H1R3 596 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 ALG2Q9H553 416 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 PAK5Q9P286 719 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 IGSF9Q9P2J2 1179 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 KLHL3Q9UH77 587 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 MED16Q9Y2X0 877 aa-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 CTDP1Q9Y5B0 961 aaPredicted RBP-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 PRRC2BQ5JSZ5 2229 aaKnown RBP-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 COL5A1P20908 1838 aaPredicted RBP-0.87□□□□□ -2.55
RNU4-88P-201ENST00000411220 USP9YO00507 2555 aaPredicted RBP-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 HSPG2P98160 4391 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 ICE1Q9Y2F5 2266 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 TRBV23OR9-2A0A075B6M9 112 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 SUPT5HO00267 1087 aaKnown RBP-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 DIAPH1O60610 1272 aaKnown RBP-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 PRB1P04280 392 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 IGKV3-11P04433 115 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 ELFN1P0C7U0 828 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 EN2P19622 333 aaPredicted RBP-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 COL8A2P25067 703 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 PGGT1BP53609 377 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 ADAM8P78325 824 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 FMR1Q06787 632 aaKnown RBP eCLIP-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 RIGQ13278 110 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 PLK5Q496M5 336 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 CD276Q5ZPR3 534 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 METRNLQ641Q3 311 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 STEAP3Q658P3 488 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 KAZNQ674X7 775 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 ASPHD2Q6ICH7 369 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 ZNF774Q6NX45 483 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 OTOP2Q7RTS6 562 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 RASAL3Q86YV0 1011 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 ANKRD53Q8N9V6 530 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 OR52N2Q8NGI0 321 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 ASB5Q8WWX0 329 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 DPF3Q92784 378 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 CUL5Q93034 780 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 RFT1Q96AA3 541 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 C2orf48Q96LS8 159 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 BARD1Q99728 777 aaKnown RBP-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 CPPED1Q9BRF8 314 aaPredicted RBP-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 KRT84Q9NSB2 600 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 BTG4Q9NY30 223 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 MYOTQ9UBF9 498 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 WDR3Q9UNX4 943 aaKnown RBP eCLIP-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 IGF2RP11717 2491 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 PALLDQ8WX93 1383 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 CELSR3Q9NYQ7 3312 aa-0.88□□□□□ -2.55
RNU4-88P-201ENST00000411220 APCP25054 2843 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 NPHP3-ACAD11A0A0J9YXS1 232 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 GCOM1H8Y6P7 765 aaPredicted RBP-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 DNAJB5O75953 348 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 PRH1P02810 166 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 CD48P09326 243 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 COL6A2P12110 1019 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 ATP5F1P24539 256 aaPredicted RBP-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 FOLR3P41439 243 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 ART1P52961 327 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 BPIFB4P59827 614 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 SPDYE7PQ495Y7 208 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 EMC4Q5J8M3 183 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 DACT2Q5SW24 774 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 LIPKQ5VXJ0 399 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 ICE2Q659A1 982 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 WBP2NLQ6ICG8 309 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 PRSS57Q6UWY2 283 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 LAYNQ6UX15 382 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 KDM7AQ6ZMT4 941 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 CXXC5Q7LFL8 322 aaKnown RBP-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 ZZZ3Q8IYH5 903 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 GLB1L3Q8NCI6 653 aaPredicted RBP-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 PHOSPHO1Q8TCT1 267 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 DLG3Q92796 817 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 FBXO17Q96EF6 278 aa-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 ZNF512BQ96KM6 892 aaPredicted RBP-0.89□□□□□ -2.55
RNU4-88P-201ENST00000411220 PRIMPOLQ96LW4 560 aa-0.89□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms