RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ZBED8Q8IZ13 594 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 RNPC3Q96LT9 517 aaKnown RBP13.56□□□□□ -0.24
COL6A3-206ENST00000409809 UBE2TQ9NPD8 197 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-206ENST00000409809 PTPN4P29074 926 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 EIF4A2Q14240 407 aaKnown RBP13.56□□□□□ -0.24
COL6A3-206ENST00000409809 HERC5Q9UII4 1024 aaKnown RBP13.56□□□□□ -0.24
COL6A3-206ENST00000409809 PTCH1Q13635 1447 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 CIAO1O76071 339 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 PIK3R1P27986 724 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 CACNA2D1P54289 1103 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 KCNB1Q14721 858 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 GLMNQ92990 594 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 NGLY1Q96IV0 654 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 PDE8AO60658 829 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 TYK2P29597 1187 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 ALDH18A1P54886 795 aaKnown RBP13.55□□□□□ -0.24
COL6A3-206ENST00000409809 XIAPP98170 497 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 ROR1Q01973 937 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 GRPEL2Q8TAA5 225 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 ARMT1Q9H993 441 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 POLR2MP0CAP2 368 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 DLG4P78352 724 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 ZCCHC7Q8N3Z6 543 aaKnown RBP13.55□□□□□ -0.24
COL6A3-206ENST00000409809 CCDC33Q8N5R6 958 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 SNRNP27Q8WVK2 155 aaKnown RBP13.55□□□□□ -0.24
COL6A3-206ENST00000409809 LENG1Q96BZ8 264 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-206ENST00000409809 ERAP1Q9NZ08 941 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 TMEM120BA0PK00 339 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 PGM3O95394 542 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 POLD1P28340 1107 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 TTC39BQ5VTQ0 682 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-206ENST00000409809 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-206ENST00000409809 PNMA1Q8ND90 353 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 MANSC1Q9H8J5 431 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 A0A1B0GTH6 734 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 STAT5AP42229 794 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 STAT5BP51692 787 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 CYP27A1Q02318 531 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 TRIP13Q15645 432 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-206ENST00000409809 LCORLQ8N3X6 602 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 BHMTQ93088 406 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 SMARCAD1Q9H4L7 1026 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 EURLQ9NYK6 297 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 A0A1W2PP64 1363 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 ANKRD65E5RJM6 399 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 SLCO1B7G3V0H7 640 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 SNAPC5O75971 98 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 POLGP54098 1239 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-206ENST00000409809 B3GALT6Q96L58 329 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 MMS19Q96T76 1030 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 PVALEFA0A1B0GWK0 134 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 SAGE2PA6NJ88 616 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 SETD9Q8NE22 299 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 H3BNX3 289 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 RNF103O00237 685 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 PRAMEP78395 509 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 CCZ1BP86790 482 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 CCZ1P86791 482 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-206ENST00000409809 STK39Q9UEW8 545 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 SQORQ9Y6N5 450 aa13.55□□□□□ -0.24
COL6A3-206ENST00000409809 PRPF3O43395 683 aaKnown RBP13.54□□□□□ -0.24
COL6A3-206ENST00000409809 ATP6V1B1P15313 513 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 HOXC8P31273 242 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 SHCBP1Q8NEM2 672 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 MAGEC3Q8TD91 643 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 NUP85Q9BW27 656 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 CD248Q9HCU0 757 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 SLC5A4Q9NY91 659 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 SELENONQ9NZV5 590 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 PARP3Q9Y6F1 533 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 MAP3K15Q6ZN16 1313 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 AARS2Q5JTZ9 985 aaKnown RBP13.54□□□□□ -0.24
COL6A3-206ENST00000409809 PLEKHA8Q96JA3 519 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 FNTAP49354 379 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 SCRN3Q0VDG4 424 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 RHPN2Q8IUC4 686 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 ULK4Q96C45 1275 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 WDR24Q96S15 920 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 SAR1AQ9NR31 198 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 OLA1Q9NTK5 396 aaKnown RBP13.54□□□□□ -0.24
COL6A3-206ENST00000409809 ZSCAN32Q9NX65 697 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 KLHL3Q9UH77 587 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 GRK2P25098 689 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 PDIA2Q13087 525 aaKnown RBP13.54□□□□□ -0.24
COL6A3-206ENST00000409809 EMILIN3Q9NT22 766 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 MYRFQ9Y2G1 1151 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 KITP10721 976 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 CNTFP26441 200 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 RAD23AP54725 363 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 RSBN1Q5VWQ0 802 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-206ENST00000409809 OTUD7BQ6GQQ9 843 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 ZNF564Q8TBZ8 553 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-206ENST00000409809 RTCBQ9Y3I0 505 aaKnown RBP13.54□□□□□ -0.24
COL6A3-206ENST00000409809 AKAP5P24588 427 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 BCAP31P51572 246 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 TKTP29401 623 aaKnown RBP13.54□□□□□ -0.24
COL6A3-206ENST00000409809 AP1S2P56377 157 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 VPS37AQ8NEZ2 397 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 INPP5DQ92835 1189 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 CAVIN3Q969G5 261 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms