RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 RASA4BC9J798 803 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 LAD1O00515 517 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 RASA4O43374 803 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 HNRNPH3P31942 346 aaKnown RBP13.82□□□□□ -0.2
PTPRN-202ENST00000409251 SSTR3P32745 418 aaPredicted RBP13.82□□□□□ -0.2
PTPRN-202ENST00000409251 ZC2HC1CQ53FD0 456 aaPredicted RBP13.82□□□□□ -0.2
PTPRN-202ENST00000409251 PALB2Q86YC2 1186 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 CCNJLQ8IV13 435 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 L3MBTL3Q96JM7 780 aaPredicted RBP13.82□□□□□ -0.2
PTPRN-202ENST00000409251 AK8Q96MA6 479 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 ZNF577Q9BSK1 485 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 PAGR1Q9BTK6 254 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 MKNK1Q9BUB5 465 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 STMN4Q9H169 189 aaPredicted RBP13.82□□□□□ -0.2
PTPRN-202ENST00000409251 COL20A1Q9P218 1284 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 IGSF9BQ9UPX0 1349 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 AFPP02771 609 aaKnown RBP13.82□□□□□ -0.2
PTPRN-202ENST00000409251 PRPHP41219 470 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 INHBEP58166 350 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 RBM46Q8TBY0 533 aaKnown RBP13.82□□□□□ -0.2
PTPRN-202ENST00000409251 LRRC8CQ8TDW0 803 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 P3H4Q92791 437 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 FGD4Q96M96 766 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 TMEM165Q9HC07 324 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 DNM3Q9UQ16 869 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 LRRC23Q53EV4 343 aaPredicted RBP13.82□□□□□ -0.2
PTPRN-202ENST00000409251 DAB2IPQ5VWQ8 1189 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 SFR1Q86XK3 245 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 FBXO41Q8TF61 875 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 ABTB1Q969K4 478 aaPredicted RBP13.82□□□□□ -0.2
PTPRN-202ENST00000409251 FHDC1Q9C0D6 1143 aaPredicted RBP13.82□□□□□ -0.2
PTPRN-202ENST00000409251 MYLK2Q9H1R3 596 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 VCXQ9H320 206 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 SLITRK6Q9H5Y7 841 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 USP20Q9Y2K6 914 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 MYO3BQ8WXR4 1341 aa13.82□□□□□ -0.2
PTPRN-202ENST00000409251 DDX3XO00571 662 aaKnown RBP eCLIP13.81□□□□□ -0.2
PTPRN-202ENST00000409251 CLK2P49760 499 aaKnown RBP13.81□□□□□ -0.2
PTPRN-202ENST00000409251 NT5DC3Q86UY8 548 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 MAB21L3Q8N8X9 362 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 AGBL3Q8NEM8 1001 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 TAAR1Q96RJ0 339 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 TTC1Q99614 292 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 NPHS2Q9NP85 383 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 RNF181Q9P0P0 153 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 SCOCQ9UIL1 159 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 USTQ9Y2C2 406 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 ADM5C9JUS6 153 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 GOLGA8SH3BPF8 625 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 GOLGA8MH3BSY2 632 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 NMT1P30419 496 aaKnown RBP13.81□□□□□ -0.2
PTPRN-202ENST00000409251 PTDSS1P48651 473 aaKnown RBP13.81□□□□□ -0.2
PTPRN-202ENST00000409251 NOVP48745 357 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 SCNN1BP51168 640 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 SOX10P56693 466 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 AUHQ13825 339 aaKnown RBP13.81□□□□□ -0.2
PTPRN-202ENST00000409251 BLMHQ13867 455 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 ZNF572Q7Z3I7 529 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-202ENST00000409251 MYCT1Q8N699 235 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 ACTRT1Q8TDG2 376 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 SLC16A10Q8TF71 515 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 GMCL1Q96IK5 515 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 RAB3IPQ96QF0 476 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-202ENST00000409251 EIF2AK1Q9BQI3 630 aaKnown RBP13.81□□□□□ -0.2
PTPRN-202ENST00000409251 RUSC1Q9BVN2 902 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 C12orf65Q9H3J6 166 aaKnown RBP13.81□□□□□ -0.2
PTPRN-202ENST00000409251 PCIF1Q9H4Z3 704 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 GGA2Q9UJY4 613 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-202ENST00000409251 C5orf60A6NFR6 353 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 CLDN3O15551 220 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 TBCAO75347 108 aaKnown RBP13.81□□□□□ -0.2
PTPRN-202ENST00000409251 MYL1P05976 194 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 MYBP10242 640 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 DRAP1Q14919 205 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-202ENST00000409251 RCN1Q15293 331 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 KIAA1683Q9H0B3 1180 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 CDC42EP4Q9H3Q1 356 aaKnown RBP13.81□□□□□ -0.2
PTPRN-202ENST00000409251 VPS37BQ9H9H4 285 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 UBN1Q9NPG3 1134 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 TELO2Q9Y4R8 837 aa13.81□□□□□ -0.2
PTPRN-202ENST00000409251 LAMB1P07942 1786 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 ASAP2O43150 1006 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 OPHN1O60890 802 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 VCAM1P19320 739 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 CA4P22748 312 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 PPP1R2P41236 205 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 RPS6KA3P51812 740 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 ZNF268Q14587 947 aaPredicted RBP13.8□□□□□ -0.2
PTPRN-202ENST00000409251 ITIH4Q14624 930 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 SYCP2LQ5T4T6 812 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 CORO1CQ9ULV4 474 aaPredicted RBP13.8□□□□□ -0.2
PTPRN-202ENST00000409251 PLIN4Q96Q06 1357 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 MMP13P45452 471 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 RPS6P62753 249 aaKnown RBP13.8□□□□□ -0.2
PTPRN-202ENST00000409251 PLCB3Q01970 1234 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 MAPK7Q13164 816 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 KAZNQ674X7 775 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 ANO7Q6IWH7 933 aa13.8□□□□□ -0.2
PTPRN-202ENST00000409251 GMCL1P1Q8NEA9 526 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms