RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 XKR4Q5GH76 650 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 CEP135Q66GS9 1140 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 FOXR2Q6PJQ5 311 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 EYSQ5T1H1 3165 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 GBF1Q92538 1859 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.34■□□□□ 0.37
HMGA1-204ENST00000401473 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.34■□□□□ 0.37
HMGA1-204ENST00000401473 BICDL2A1A5D9 508 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 ZNF233A6NK53 670 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 LACTBL1A8MY62 500 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 TDRD15B5MCY1 1934 aaKnown RBP17.34■□□□□ 0.37
HMGA1-204ENST00000401473 SOX1O00570 391 aaPredicted RBP17.34■□□□□ 0.37
HMGA1-204ENST00000401473 POMCP01189 267 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 RPL13P26373 211 aaKnown RBP17.34■□□□□ 0.37
HMGA1-204ENST00000401473 CT47A1Q5JQC4 288 aaPredicted RBP17.34■□□□□ 0.37
HMGA1-204ENST00000401473 HACE1Q8IYU2 909 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 CSGALNACT2Q8N6G5 542 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 SNX27Q96L92 541 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 TSG101Q99816 390 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 SRRTQ9BXP5 876 aaKnown RBP17.34■□□□□ 0.37
HMGA1-204ENST00000401473 PBX4Q9BYU1 374 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 RPF1Q9H9Y2 349 aaKnown RBP17.34■□□□□ 0.37
HMGA1-204ENST00000401473 UBN1Q9NPG3 1134 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 HCSTQ9UBK5 93 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 DACH1Q9UI36 760 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 INPP5FQ9Y2H2 1132 aa17.34■□□□□ 0.37
HMGA1-204ENST00000401473 LCHNA4D1U4 455 aa17.33■□□□□ 0.37
HMGA1-204ENST00000401473 KYAT1Q16773 422 aa17.33■□□□□ 0.37
HMGA1-204ENST00000401473 GLRA4Q5JXX5 417 aa17.33■□□□□ 0.37
HMGA1-204ENST00000401473 GLB1LQ6UWU2 654 aa17.33■□□□□ 0.37
HMGA1-204ENST00000401473 TMEM130Q8N3G9 435 aa17.33■□□□□ 0.37
HMGA1-204ENST00000401473 PLEKHO2Q8TD55 490 aa17.33■□□□□ 0.37
HMGA1-204ENST00000401473 FAM212AQ96EL1 285 aa17.33■□□□□ 0.37
HMGA1-204ENST00000401473 BORCS6Q96GS4 357 aa17.33■□□□□ 0.37
HMGA1-204ENST00000401473 RAD9AQ99638 391 aa17.33■□□□□ 0.37
HMGA1-204ENST00000401473 ZBED2Q9BTP6 218 aa17.33■□□□□ 0.37
HMGA1-204ENST00000401473 KIAA1586Q9HCI6 787 aa17.33■□□□□ 0.37
HMGA1-204ENST00000401473 PDE11AQ9HCR9 933 aa17.33■□□□□ 0.37
HMGA1-204ENST00000401473 RBAKQ9NYW8 714 aaPredicted RBP17.33■□□□□ 0.37
HMGA1-204ENST00000401473 YBX2Q9Y2T7 364 aaKnown RBP17.33■□□□□ 0.37
HMGA1-204ENST00000401473 REV3LO60673 3130 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 SMIM28A0A1B0GU29 152 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 TBKBP1A7MCY6 615 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 CETN3O15182 167 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 INPPL1O15357 1258 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 SCNN1GP51170 649 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 YARSP54577 528 aaKnown RBP17.33■□□□□ 0.36
HMGA1-204ENST00000401473 NAB2Q15742 525 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 PAN2Q504Q3 1202 aaKnown RBP17.33■□□□□ 0.36
HMGA1-204ENST00000401473 NOMO2Q5JPE7 1267 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 IRF2BP1Q8IU81 584 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 BRSK2Q8IWQ3 736 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 FAM84AQ96KN4 292 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 MFSD14AQ96MC6 490 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 YME1L1Q96TA2 773 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 POP1Q99575 1024 aaKnown RBP17.33■□□□□ 0.36
HMGA1-204ENST00000401473 TMEM117Q9H0C3 514 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 PLEKHA5Q9HAU0 1116 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 TOPORSQ9NS56 1045 aaPredicted RBP17.33■□□□□ 0.36
HMGA1-204ENST00000401473 RNF216Q9NWF9 866 aaPredicted RBP17.33■□□□□ 0.36
HMGA1-204ENST00000401473 CNTN3Q9P232 1028 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 INSL6Q9Y581 213 aa17.33■□□□□ 0.36
HMGA1-204ENST00000401473 TLL1O43897 1013 aa17.32■□□□□ 0.36
HMGA1-204ENST00000401473 B4GALT3O60512 393 aa17.32■□□□□ 0.36
HMGA1-204ENST00000401473 ARHGEF15O94989 841 aa17.32■□□□□ 0.36
HMGA1-204ENST00000401473 POU5F1Q01860 360 aaKnown RBP17.32■□□□□ 0.36
HMGA1-204ENST00000401473 ZNF280BQ86YH2 543 aa17.32■□□□□ 0.36
HMGA1-204ENST00000401473 ABI1Q8IZP0 508 aa17.32■□□□□ 0.36
HMGA1-204ENST00000401473 ENOX1Q8TC92 643 aaKnown RBP17.32■□□□□ 0.36
HMGA1-204ENST00000401473 TBC1D13Q9NVG8 400 aa17.32■□□□□ 0.36
HMGA1-204ENST00000401473 FRMD4BQ9Y2L6 1034 aa17.32■□□□□ 0.36
HMGA1-204ENST00000401473 PDCD11Q14690 1871 aaKnown RBP17.32■□□□□ 0.36
HMGA1-204ENST00000401473 TULP1O00294 542 aaPredicted RBP17.31■□□□□ 0.36
HMGA1-204ENST00000401473 DDHD2O94830 711 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 PSMC2P35998 433 aaKnown RBP17.31■□□□□ 0.36
HMGA1-204ENST00000401473 DLG4P78352 724 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 CYP24A1Q07973 514 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 NCAPHQ15003 741 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 ZBTB6Q15916 424 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 SCARA3Q6AZY7 606 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 LRSAM1Q6UWE0 723 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 FILIP1Q7Z7B0 1213 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 PPP1R10Q96QC0 940 aaKnown RBP17.31■□□□□ 0.36
HMGA1-204ENST00000401473 SAMSN1Q9NSI8 373 aaKnown RBP17.31■□□□□ 0.36
HMGA1-204ENST00000401473 PTPRJQ12913 1337 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 HOXA2O43364 376 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 KCNE1P15382 129 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 ZNF165P49910 485 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 HABP4Q5JVS0 413 aaKnown RBP17.31■□□□□ 0.36
HMGA1-204ENST00000401473 SPATA1Q5VX52 437 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 JADE1Q6IE81 842 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 SPRED2Q7Z698 418 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 EFCAB13Q8IY85 973 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 PARD3BQ8TEW8 1205 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 CCDC127Q96BQ5 260 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 ASB7Q9H672 318 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 CACNG4Q9UBN1 327 aa17.31■□□□□ 0.36
HMGA1-204ENST00000401473 THP07101 528 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 NFICP08651 508 aa17.3■□□□□ 0.36
HMGA1-204ENST00000401473 LINC00271P0C7V0 271 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms