RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 FAM107AO95990 144 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 GPS1Q13098 491 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 NT5DC3Q86UY8 548 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 PPFIBP2Q8ND30 876 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 ZNF280CQ8ND82 737 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 MDM1Q8TC05 714 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 PITPNM3Q9BZ71 974 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 CALRP27797 417 aaKnown RBP19.73■□□□□ 0.75
USP48-204ENST00000400301 FBXW10Q5XX13 1052 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 RAB3IPQ96QF0 476 aaPredicted RBP19.73■□□□□ 0.75
USP48-204ENST00000400301 XPO6Q96QU8 1125 aaKnown RBP19.73■□□□□ 0.75
USP48-204ENST00000400301 GDF3Q9NR23 364 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 TMEM150BA6NC51 233 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 FANCGO15287 622 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 COILP38432 576 aaPredicted RBP19.72■□□□□ 0.75
USP48-204ENST00000400301 NEDD9Q14511 834 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 PPP2R5DQ14738 602 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 LONRF1Q17RB8 773 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 HGSNATQ68CP4 663 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 ZNF354CQ86Y25 554 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 SYTL5Q8TDW5 730 aaPredicted RBP19.72■□□□□ 0.75
USP48-204ENST00000400301 TAS1R2Q8TE23 839 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 CYFIP2Q96F07 1278 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 FAM167AQ96KS9 214 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 WDR18Q9BV38 432 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 C2CD6Q53TS8 623 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 ICE2Q659A1 982 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 AMIGO3Q86WK7 504 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 HSPH1Q92598 858 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 C9orf72Q96LT7 481 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 TMBIM4Q9HC24 238 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 PARVAQ9NVD7 372 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 PCSK1NQ9UHG2 260 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 HSPA9P38646 679 aaKnown RBP19.72■□□□□ 0.75
USP48-204ENST00000400301 CDR2Q01850 454 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 MYBPC2Q14324 1141 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 EMC2Q15006 297 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 AGBL3Q8NEM8 1001 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 RILPQ96NA2 401 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 APOL6Q9BWW8 343 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 MRPL4Q9BYD3 311 aaKnown RBP19.72■□□□□ 0.75
USP48-204ENST00000400301 PABPC3Q9H361 631 aaKnown RBP19.72■□□□□ 0.75
USP48-204ENST00000400301 CNOT7Q9UIV1 285 aaKnown RBP19.72■□□□□ 0.75
USP48-204ENST00000400301 LAMB4A4D0S4 1761 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 LRP6O75581 1613 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 IGSF9BQ9UPX0 1349 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 TISP43B9A030 160 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 PSMD10O75832 226 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 DPEP1P16444 411 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 CDO1Q16878 200 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 NBPF9Q3BBW0 867 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 SESTD1Q86VW0 696 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 RHPN2Q8IUC4 686 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 C7orf31Q8N865 590 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 RBBP8NLQ8NC74 664 aaPredicted RBP19.72■□□□□ 0.75
USP48-204ENST00000400301 MRIQ9BWK5 157 aa19.72■□□□□ 0.75
USP48-204ENST00000400301 CYP11B1P15538 503 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 DUOXA2Q1HG44 320 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 EPM2AIP1Q7L775 607 aaPredicted RBP19.71■□□□□ 0.75
USP48-204ENST00000400301 IRF2BP2Q7Z5L9 587 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 SLC47A2Q86VL8 602 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 MYCBPAPQ8TBZ2 947 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 RNF34Q969K3 372 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 TARS2Q9BW92 718 aaKnown RBP19.71■□□□□ 0.75
USP48-204ENST00000400301 DEFB129Q9H1M3 183 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 TOPORSQ9NS56 1045 aaPredicted RBP19.71■□□□□ 0.75
USP48-204ENST00000400301 MT-ND3P03897 115 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 STAT5BP51692 787 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 NCOA4Q13772 614 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 SAMD7Q7Z3H4 446 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 RPS6KC1Q96S38 1066 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 AGO4Q9HCK5 861 aaKnown RBP19.71■□□□□ 0.75
USP48-204ENST00000400301 NGRNQ9NPE2 291 aaKnown RBP19.71■□□□□ 0.75
USP48-204ENST00000400301 GINM1Q9NU53 330 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 SALL4Q9UJQ4 1053 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 PRPSAP2O60256 369 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 GZMAP12544 262 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 ITIH2P19823 946 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 KYNUQ16719 465 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 ARHGEF26Q96DR7 871 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 PRMT1Q99873 361 aaKnown RBP19.71■□□□□ 0.75
USP48-204ENST00000400301 IKZF4Q9H2S9 585 aa19.71■□□□□ 0.75
USP48-204ENST00000400301 COL14A1Q05707 1796 aaKnown RBP19.71■□□□□ 0.75
USP48-204ENST00000400301 MAFGO15525 162 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 NOL4O94818 638 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 ACAD10Q6JQN1 1059 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 TRMT10CQ7L0Y3 403 aaKnown RBP19.7■□□□□ 0.74
USP48-204ENST00000400301 ARHGEF19Q8IW93 802 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 RNF149Q8NC42 400 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 PSMC1P62191 440 aaKnown RBP19.7■□□□□ 0.74
USP48-204ENST00000400301 SARNPP82979 210 aaKnown RBP19.7■□□□□ 0.74
USP48-204ENST00000400301 ZCWPW2Q504Y3 356 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 ATP8B4Q8TF62 1192 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 DHX38Q92620 1227 aaKnown RBP19.7■□□□□ 0.74
USP48-204ENST00000400301 HSD17B14Q9BPX1 270 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 PDCD2LQ9BRP1 358 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 TRAIPQ9BWF2 469 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 OSBPL8Q9BZF1 889 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 CES2O00748 559 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 CIB2O75838 187 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms