RNA–Protein interactions for RNA: ENST00000398510.7

CHD9-202, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best) BASIC

Gene CHD9, Length 11,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-202ENST00000398510 IRX2Q9BZI1 471 aaPredicted RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 PKD2L2Q9NZM6 624 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 POLKQ9UBT6 870 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 GUCA1BQ9UMX6 200 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 POLR2AP24928 1970 aaKnown RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 TTC3P53804 2025 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 GOLGA8KD6RF30 607 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 H0YJX3 145 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 CREB3O43889 395 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 LDOC1O95751 146 aaPredicted RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 LIFRP42702 1097 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 SLC1A1P43005 524 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 HSPA13P48723 471 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 PABPC1LQ4VXU2 614 aaKnown RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 SEPT12Q8IYM1 358 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 PPM1KQ8N3J5 372 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 NSUN7Q8NE18 718 aaKnown RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 GAS2L1Q99501 681 aaPredicted RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 NUDT12Q9BQG2 462 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 CCDC8Q9H0W5 538 aaPredicted RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 GOLPH3LQ9H4A5 285 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 RAD21L1Q9H4I0 556 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 MRTO4Q9UKD2 239 aaKnown RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 CHUKO15111 745 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 SCGB2A1O75556 95 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 URI1O94763 535 aaPredicted RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 MTA2O94776 668 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 RTN3O95197 1032 aaPredicted RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 HSPA4LO95757 839 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 RPSAP08865 295 aaKnown RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 RASA1P20936 1047 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 AXLP30530 894 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 NLRP11P59045 1033 aaKnown RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 CDK17Q00537 523 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 DMPKQ09013 629 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 ZNF235Q14590 738 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 NFE2Q16621 373 aaPredicted RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 HEATR6Q6AI08 1181 aaKnown RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 DNAAF3Q8N9W5 541 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 GDAP1Q8TB36 358 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 TGFBRAP1Q8WUH2 860 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 KLF6Q99612 283 aaPredicted RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 THAP9Q9H5L6 903 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 COG4Q9H9E3 785 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 NARFQ9UHQ1 456 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 IGSF1Q8N6C5 1336 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 KCNJ18B7U540 433 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 USP17L15C9J2P7 530 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 USP17L13C9JLJ4 530 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 USP17L11C9JVI0 530 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 USP17L18D6R9N7 530 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 USP17L22D6RA61 530 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 USP17L17D6RBQ6 530 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 USP17L19D6RCP7 530 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 USP17L20D6RJB6 530 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 CCDC188H7C350 402 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 SLC16A3O15427 465 aaKnown RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 FAM200BP0CF97 657 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 PNMA6AP0CW24 399 aaPredicted RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 ERVK-10P10266 1014 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 SOX5P35711 763 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 AFMP43652 599 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 HIRAP54198 1017 aaPredicted RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 HUNKP57058 714 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 USP17L24Q0WX57 530 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 PRKAA1Q13131 559 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 KCNJ12Q14500 433 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 SKIV2LQ15477 1246 aaKnown RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 HIST2H2ACQ16777 129 aaPredicted RBP2.88□□□□□ -1.95
CHD9-202ENST00000398510 CCDC184Q52MB2 194 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 HECTD3Q5T447 861 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 HIST2H2AA3Q6FI13 130 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 DGKHQ86XP1 1220 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 GPRC5AQ8NFJ5 357 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 TTLL11Q8NHH1 800 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 MOSPD2Q8NHP6 518 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 UBE2E3Q969T4 207 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 SH3KBP1Q96B97 665 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 CEP170P1Q96L14 293 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 ANTXR1Q9H6X2 564 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 NCKAP1Q9Y2A7 1128 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 QSER1Q2KHR3 1735 aa2.88□□□□□ -1.95
CHD9-202ENST00000398510 PGRMC1O00264 195 aaKnown RBP2.87□□□□□ -1.95
CHD9-202ENST00000398510 NCK2O43639 380 aa2.87□□□□□ -1.95
CHD9-202ENST00000398510 SEMA3DO95025 777 aa2.87□□□□□ -1.95
CHD9-202ENST00000398510 ECEL1O95672 775 aa2.87□□□□□ -1.95
CHD9-202ENST00000398510 SYF2O95926 243 aaKnown RBP2.87□□□□□ -1.95
CHD9-202ENST00000398510 KRT4P19013 534 aa2.87□□□□□ -1.95
CHD9-202ENST00000398510 CMA1P23946 247 aa2.87□□□□□ -1.95
CHD9-202ENST00000398510 CTNNA1P35221 906 aaKnown RBP2.87□□□□□ -1.95
CHD9-202ENST00000398510 RPL3P39023 403 aaKnown RBP2.87□□□□□ -1.95
CHD9-202ENST00000398510 FXR1P51114 621 aaKnown RBP eCLIP2.87□□□□□ -1.95
CHD9-202ENST00000398510 FKBP1AP62942 108 aaKnown RBP2.87□□□□□ -1.95
CHD9-202ENST00000398510 TFAMQ00059 246 aaKnown RBP2.87□□□□□ -1.95
CHD9-202ENST00000398510 SP4Q02446 784 aa2.87□□□□□ -1.95
CHD9-202ENST00000398510 LRMPQ12912 555 aa2.87□□□□□ -1.95
CHD9-202ENST00000398510 DYNC1I2Q13409 638 aaKnown RBP2.87□□□□□ -1.95
CHD9-202ENST00000398510 CNGA2Q16280 664 aa2.87□□□□□ -1.95
CHD9-202ENST00000398510 KIZQ2M2Z5 673 aa2.87□□□□□ -1.95
CHD9-202ENST00000398510 TTC23Q5W5X9 447 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms