RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 DDX56Q9NY93 547 aaKnown RBP11.72□□□□□ -0.53
HPS4-202ENST00000398145 ITSN1Q15811 1721 aa11.72□□□□□ -0.53
HPS4-202ENST00000398145 SRRM3A6NNA2 597 aaPredicted RBP11.71□□□□□ -0.53
HPS4-202ENST00000398145 PI4K2BG5E9Z4 385 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 FGFR2P21802 821 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 VHLP40337 213 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 SPOPLQ6IQ16 392 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 SPATA20Q8TB22 786 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 ZKSCAN4Q969J2 545 aaPredicted RBP11.71□□□□□ -0.53
HPS4-202ENST00000398145 SEMA4AQ9H3S1 761 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 CYP26B1Q9NR63 512 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 ZNF277Q9NRM2 450 aaPredicted RBP11.71□□□□□ -0.53
HPS4-202ENST00000398145 PCSK1NQ9UHG2 260 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 TNS3Q68CZ2 1445 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 SYNJ2BP-COX16A0A087WUM0 186 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 CCDC195A0A1B0GUA6 201 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 EIF3DO15371 548 aaKnown RBP eCLIP11.71□□□□□ -0.53
HPS4-202ENST00000398145 TARSP26639 723 aaKnown RBP11.71□□□□□ -0.53
HPS4-202ENST00000398145 DNAL1Q4LDG9 190 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 C16orf86Q6ZW13 317 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 CD302Q8IX05 232 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 TEKT4Q8WW24 435 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 MTBPQ96DY7 904 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 NAF1Q96HR8 494 aaKnown RBP11.71□□□□□ -0.53
HPS4-202ENST00000398145 RPS6KC1Q96S38 1066 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 OSGEPQ9NPF4 335 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 COX16Q9P0S2 106 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 GTF3C4Q9UKN8 822 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 HEY1Q9Y5J3 304 aa11.71□□□□□ -0.53
HPS4-202ENST00000398145 ENO1P06733 434 aaKnown RBP11.71□□□□□ -0.54
HPS4-202ENST00000398145 PBX1P40424 430 aa11.71□□□□□ -0.54
HPS4-202ENST00000398145 KCNMA1Q12791 1236 aa11.71□□□□□ -0.54
HPS4-202ENST00000398145 CDO1Q16878 200 aa11.71□□□□□ -0.54
HPS4-202ENST00000398145 PPP6R3Q5H9R7 873 aaPredicted RBP11.71□□□□□ -0.54
HPS4-202ENST00000398145 TMEM117Q9H0C3 514 aa11.71□□□□□ -0.54
HPS4-202ENST00000398145 ANLNQ9NQW6 1124 aa11.71□□□□□ -0.54
HPS4-202ENST00000398145 HSPBP1Q9NZL4 362 aa11.71□□□□□ -0.54
HPS4-202ENST00000398145 FLT1P17948 1338 aa11.71□□□□□ -0.54
HPS4-202ENST00000398145 RCCD1A6NED2 376 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 ATMINO43313 823 aaPredicted RBP11.7□□□□□ -0.54
HPS4-202ENST00000398145 TNFRSF8P28908 595 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 SERPINB4P48594 390 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 TFDP1Q14186 410 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 LVRNQ6Q4G3 990 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 ZBTB33Q86T24 672 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 MREGQ8N565 214 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 CHORDC1Q9UHD1 332 aaPredicted RBP11.7□□□□□ -0.54
HPS4-202ENST00000398145 TRAF3IP3Q9Y228 551 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 MTO1Q9Y2Z2 717 aaKnown RBP11.7□□□□□ -0.54
HPS4-202ENST00000398145 ZHX2Q9Y6X8 837 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 ZNF335Q9H4Z2 1342 aaPredicted RBP11.7□□□□□ -0.54
HPS4-202ENST00000398145 CATSPER3Q86XQ3 398 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 CLEC10AQ8IUN9 316 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 APLFQ8IW19 511 aaPredicted RBP11.7□□□□□ -0.54
HPS4-202ENST00000398145 RCOR2Q8IZ40 523 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 HDAC11Q96DB2 347 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 DTNBP1Q96EV8 351 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 BTBD6Q96KE9 485 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 AS3MTQ9HBK9 375 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 IRAK4Q9NWZ3 460 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 CNOT7Q9UIV1 285 aaKnown RBP11.7□□□□□ -0.54
HPS4-202ENST00000398145 PCDHGC5Q9Y5F6 944 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.7□□□□□ -0.54
HPS4-202ENST00000398145 B2RBV5 119 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 UBAP1LF5GYI3 381 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 FOXN3O00409 490 aaPredicted RBP11.7□□□□□ -0.54
HPS4-202ENST00000398145 ACADSP16219 412 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 IFRD2Q12894 506 aaPredicted RBP11.7□□□□□ -0.54
HPS4-202ENST00000398145 KCTD17Q8N5Z5 321 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 CDC42EP4Q9H3Q1 356 aaKnown RBP11.7□□□□□ -0.54
HPS4-202ENST00000398145 JMJD4Q9H9V9 463 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 KIF9Q9HAQ2 790 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 KCND2Q9NZV8 630 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 ZFATQ9P243 1243 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 PHTF1Q9UMS5 762 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 L3MBTL1Q9Y468 752 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 UBE4BO95155 1302 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 P4HA2O15460 535 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 KRT10P13645 584 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 KPNA2P52292 529 aaKnown RBP11.7□□□□□ -0.54
HPS4-202ENST00000398145 KRT76Q01546 638 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 NBPF20Q3BBV1 942 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 PREPLQ4J6C6 727 aaPredicted RBP11.7□□□□□ -0.54
HPS4-202ENST00000398145 ZNF667Q5HYK9 610 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 BZW1Q7L1Q6 419 aaKnown RBP11.7□□□□□ -0.54
HPS4-202ENST00000398145 SCFD1Q8WVM8 642 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 MAGEB18Q96M61 343 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 DCLRE1BQ9H816 532 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 SLC38A10Q9HBR0 1119 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 RXFP1Q9HBX9 757 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 ASNSD1Q9NWL6 643 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 HAO1Q9UJM8 370 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 C15orf41Q9Y2V0 281 aa11.7□□□□□ -0.54
HPS4-202ENST00000398145 KRT3P12035 628 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 OSTNP61366 133 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 CENPCQ03188 943 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 PRPSAP1Q14558 356 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 NAIF1Q69YI7 327 aaPredicted RBP11.69□□□□□ -0.54
HPS4-202ENST00000398145 MCUQ8NE86 351 aa11.69□□□□□ -0.54
HPS4-202ENST00000398145 CPA5Q8WXQ8 436 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms