RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 VPS37AQ8NEZ2 397 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 TDRD7Q8NHU6 1098 aaKnown RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 ZNF564Q8TBZ8 553 aaPredicted RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 CELF1Q92879 486 aaKnown RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 PPP1R13BQ96KQ4 1090 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 STRBPQ96SI9 672 aaKnown RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 SLC13A1Q9BZW2 595 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 YY1AP1Q9H869 796 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 AKAP7Q9P0M2 348 aaPredicted RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 SPASTQ9UBP0 616 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 AP3B1O00203 1094 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 ARHGEF9O43307 516 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 CD4P01730 458 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 SULT1E1P49888 294 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 KCNH2Q12809 1159 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 MAPRE2Q15555 327 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 BBS7Q8IWZ6 715 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 ATP11CQ8NB49 1132 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 ARRDC4Q8NCT1 418 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 USP33Q8TEY7 942 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 PAGE5Q96GU1 130 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 GJD4Q96KN9 370 aaPredicted RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 ZMAT2Q96NC0 199 aaKnown RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 MED15Q96RN5 788 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 COLEC11Q9BWP8 271 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 WDR41Q9HAD4 459 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 ENTPD7Q9NQZ7 604 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 DPP7Q9UHL4 492 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 DIS3Q9Y2L1 958 aaKnown RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 MEFVO15553 781 aaPredicted RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 TADA3O75528 432 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 CYP2C19P33261 490 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 CAV1Q03135 178 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 HIST2H2ACQ16777 129 aaPredicted RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 PTPN21Q16825 1174 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 UGP2Q16851 508 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 KNOP1Q1ED39 458 aaKnown RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 CEP55Q53EZ4 464 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 C10orf120Q5SQS8 335 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 HIST2H2AA3Q6FI13 130 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 PPP1R18Q6NYC8 613 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 MTHFD1LQ6UB35 978 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 ZNF280CQ8ND82 737 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 JADE3Q92613 823 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 C18orf8Q96DM3 657 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 NR2E3Q9Y5X4 410 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 NPHP4O75161 1426 aaPredicted RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 POTEFA5A3E0 1075 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 FAM47E-STBD1D6RA91 191 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 SYNCRIPO60506 623 aaKnown RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 DGAT1O75907 488 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 FKBP9O95302 570 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 POTEIP0CG38 1075 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 HPGDP15428 266 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 ATN1P54259 1190 aaPredicted RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 TMEM132DQ14C87 1099 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 ANKS6Q68DC2 871 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 POTEGQ6S5H5 508 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 POTEEQ6S8J3 1075 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 FKBP9P1Q75LS8 142 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 TMC7Q7Z402 723 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 TRIM69Q86WT6 500 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 SP8Q8IXZ3 490 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 ST13P4Q8IZP2 240 aaPredicted RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 PROM2Q8N271 834 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 AGR3Q8TD06 166 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 AIFM3Q96NN9 605 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 NUP85Q9BW27 656 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 ZNF556Q9HAH1 456 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 KLHL11Q9NVR0 708 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 CRLS1Q9UJA2 301 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 PNMA8BQ9ULN7 279 aaPredicted RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 CCDC195A0A1B0GUA6 201 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 SNAP23O00161 211 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 APOL1O14791 398 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 ANGPT2O15123 496 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 CAPN15O75808 1086 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 BRAFP15056 766 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 PDGFRAP16234 1089 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 CDH2P19022 906 aaPredicted RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 IGFBP4P22692 258 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 RGS7P49802 495 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 PTPN12Q05209 780 aaKnown RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 EPHA7Q15375 998 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 ANGPT1Q15389 498 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 DEPDC1Q5TB30 811 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 ZNF614Q8N883 585 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 SNX31Q8N9S9 440 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 LPAR1Q92633 364 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 SKA1Q96BD8 255 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 SENP2Q9HC62 589 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.57□□□□□ -1.22e-10■■■■□ 20
UPF2-203ENST00000397053 FBXL21Q9UKT6 434 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 MROH7-TTC4A0A0A0MT08 1334 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 CCDC78A2IDD5 438 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 HEATR9A2RTY3 570 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 SLC25A27O95847 323 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 IL10P22301 178 aa7.57□□□□□ -1.2
UPF2-203ENST00000397053 MZF1P28698 734 aaPredicted RBP7.57□□□□□ -1.2
UPF2-203ENST00000397053 PDIA2Q13087 525 aaKnown RBP7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms