RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ANGPTL8Q6UXH0 198 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 LRRC31Q6UY01 552 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 PRMT1Q99873 361 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 C7orf25Q9BPX7 421 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 EIF2AK1Q9BQI3 630 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 ZBED2Q9BTP6 218 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 BEGAINQ9BUH8 593 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 STK33Q9BYT3 514 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 ASPSCR1Q9BZE9 553 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 CD209Q9NNX6 404 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 C6orf203Q9P0P8 240 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 PLEKHG2Q9H7P9 1386 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 SERPINB3P29508 390 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 ARPP19P56211 112 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 CAPRIN1Q14444 709 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 RASSF3Q86WH2 238 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 ARL10Q8N8L6 244 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 CARD9Q9H257 536 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 SRP68Q9UHB9 627 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 TMA7Q9Y2S6 64 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 SLC26A4O43511 780 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 ANP32DO95626 131 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 SCP2P22307 547 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 CCDC85BQ15834 202 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 ARHGAP27Q6ZUM4 889 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 CCDC80Q76M96 950 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 ULK4Q96C45 1275 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 RAD21L1Q9H4I0 556 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 EHD2Q9NZN4 543 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 ZHX2Q9Y6X8 837 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 PRR23D1E9PI22 279 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 PRR23D2P0DMB1 279 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 IL10P22301 178 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 LSP1P33241 339 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 NSUN2Q08J23 767 aaKnown RBP eCLIP10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 EFHC2Q5JST6 749 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 RAD9BQ6WBX8 426 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 HAUS6Q7Z4H7 955 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 RHPN2Q8IUC4 686 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 ADGRF4Q8IZF3 695 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 OR9Q1Q8NGQ5 310 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 SNX19Q92543 992 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 IFT43Q96FT9 208 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 ACAP3Q96P50 834 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 MRPL4Q9BYD3 311 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 CCDC90BQ9GZT6 254 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 TUFT1Q9NNX1 390 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 LRRIQ3A6PVS8 624 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 SNAP23O00161 211 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 KIAA0391O15091 583 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 FOSL2P15408 326 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 GALCP54803 685 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 CDH6P55285 790 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 ACTR2P61160 394 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 KLC1Q07866 573 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 IMPG1Q17R60 797 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 FAM102AQ5T9C2 384 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 CNBD2Q96M20 576 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 FAM49AQ9H0Q0 323 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 RPS6KA4O75676 772 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 TMC5Q6UXY8 1006 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 THEM5Q8N1Q8 247 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 USP33Q8TEY7 942 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 PHF20Q9BVI0 1012 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 POLD4Q9HCU8 107 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 RBAKQ9NYW8 714 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 NPHP4O75161 1426 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 ZNF335Q9H4Z2 1342 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 GUCY1A2P33402 732 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 RCOR2Q8IZ40 523 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 HNRNPLLQ8WVV9 542 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 MS4A14Q96JA4 679 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 SEC16BQ96JE7 1060 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 TIPINQ9BVW5 301 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 ROPN1BQ9BZX4 212 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 ROPN1Q9HAT0 212 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 A2ML1A8K2U0 1454 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 WDR47O94967 919 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 S100A9P06702 114 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 EIF3EP60228 445 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 AP1B1Q10567 949 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 FBXW10Q5XX13 1052 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 CIAPIN1Q6FI81 312 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 KIRREL3Q8IZU9 778 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 SRBD1Q8N5C6 995 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 IL17RAQ96F46 866 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 GINS4Q9BRT9 223 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 ZNF302Q9NR11 478 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 GABBR1Q9UBS5 961 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 APEX2Q9UBZ4 518 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 A0A1W2PQJ5 194 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 F5H6K3 240 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 CCND1P24385 295 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 KLRC3Q07444 240 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 TRIM28Q13263 835 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 NAB2Q15742 525 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 RABL6Q3YEC7 729 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 MTHFD1LQ6UB35 978 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 NANOGNBQ7Z5D8 188 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 MMGT1Q8N4V1 131 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms