RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ZNF720Q7Z2F6 126 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 ADSSL1Q8N142 457 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 DBF4BQ8NFT6 615 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 PPTC7Q8NI37 304 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 CACNG4Q9UBN1 327 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 MLH1P40692 756 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 RBM23Q86U06 439 aaKnown RBP11.04□□□□□ -0.64
COL6A3-205ENST00000392004 CNPY4Q8N129 248 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 TNFRSF25Q93038 417 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 FGFBP2Q9BYJ0 223 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 PLCB1Q9NQ66 1216 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 KBTBD4Q9NVX7 518 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 ANKRD63C9JTQ0 380 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 SCAMP3O14828 347 aaKnown RBP11.04□□□□□ -0.64
COL6A3-205ENST00000392004 ACAT1P24752 427 aaKnown RBP11.04□□□□□ -0.64
COL6A3-205ENST00000392004 MAGEA9P43362 315 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 SCNN1GP51170 649 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 ICE2Q659A1 982 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 KRT39Q6A163 491 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 MTHFD1LQ6UB35 978 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 FAM71BQ8TC56 605 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 ZFP42Q96MM3 310 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 VAV3Q9UKW4 847 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 PASKQ96RG2 1323 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 GRAP2O75791 330 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 RHOBTB3O94955 611 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 EEF1GP26641 437 aaKnown RBP11.04□□□□□ -0.64
COL6A3-205ENST00000392004 NAMPTP43490 491 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 CAPSQ13938 189 aa11.04□□□□□ -0.64
COL6A3-205ENST00000392004 REM2Q8IYK8 340 aaPredicted RBP11.04□□□□□ -0.64
COL6A3-205ENST00000392004 ABI2Q9NYB9 513 aaPredicted RBP11.04□□□□□ -0.64
COL6A3-205ENST00000392004 KRT86O43790 486 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 N4BP1O75113 896 aaKnown RBP11.03□□□□□ -0.64
COL6A3-205ENST00000392004 TOM1L1O75674 476 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 PAFAH1B1P43034 410 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 ALCAMQ13740 583 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 MESDQ14696 234 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 MGAT5BQ3V5L5 792 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 DNAAF5Q86Y56 855 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 MTMR8Q96EF0 704 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 GOLGA2P5Q9HBQ8 144 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 ABCB6Q9NP58 842 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 PRRG1O14668 218 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 PPARDQ03181 441 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 ARHGAP1Q07960 439 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 PPP2R5DQ14738 602 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 ZNF792Q3KQV3 632 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 MAP9Q49MG5 647 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 NAA35Q5VZE5 725 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 TMCO2Q7Z6W1 182 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-205ENST00000392004 SAMD3Q8N6K7 520 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 KIAA0895Q8NCT3 520 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 HNRNPLLQ8WVV9 542 aaKnown RBP11.03□□□□□ -0.64
COL6A3-205ENST00000392004 PGBD4Q96DM1 585 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 NAA15Q9BXJ9 866 aaKnown RBP11.03□□□□□ -0.64
COL6A3-205ENST00000392004 FAM107BQ9H098 131 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 NGRNQ9NPE2 291 aaKnown RBP11.03□□□□□ -0.64
COL6A3-205ENST00000392004 MORF4L1Q9UBU8 362 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 COL4A5P29400 1685 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 PCNTO95613 3336 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 CYP26A1O43174 497 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 AKAP3O75969 853 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 MOCS2O96007 188 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-205ENST00000392004 HMBSP08397 361 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 HLTFQ14527 1009 aaKnown RBP eCLIP11.03□□□□□ -0.64
COL6A3-205ENST00000392004 TRIM60Q495X7 471 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 LIN9Q5TKA1 542 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 KAZNQ674X7 775 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 CCDC117Q8IWD4 279 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-205ENST00000392004 TC2NQ8N9U0 490 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 FBXL13Q8NEE6 735 aa11.03□□□□□ -0.64
COL6A3-205ENST00000392004 PDXKO00764 312 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 MAP2K7O14733 419 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 KPNA6O60684 536 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 CNMDO75829 334 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 RECQL4O94761 1208 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 MCM3P25205 808 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 RAP1GAPP47736 663 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 KRT83P78385 493 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 GSTA5Q7RTV2 222 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 SIX6OS1Q8N1H7 587 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 HELQQ8TDG4 1101 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 NAPGQ99747 312 aaPredicted RBP11.02□□□□□ -0.64
COL6A3-205ENST00000392004 C11orf70Q9BRQ4 267 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 CELF4Q9BZC1 486 aaKnown RBP11.02□□□□□ -0.64
COL6A3-205ENST00000392004 PGAP2Q9UHJ9 254 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 HYOU1Q9Y4L1 999 aa11.02□□□□□ -0.64
COL6A3-205ENST00000392004 TACC1O75410 805 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 RGS20O76081 388 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 TNFSF9P41273 254 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 CDH8P55286 799 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 PSMC1P62191 440 aaKnown RBP11.02□□□□□ -0.65
COL6A3-205ENST00000392004 IKBKEQ14164 716 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 DRAP1Q14919 205 aaPredicted RBP11.02□□□□□ -0.65
COL6A3-205ENST00000392004 NIPA1Q7RTP0 329 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 TTC30AQ86WT1 665 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 NXF3Q9H4D5 531 aaKnown RBP11.02□□□□□ -0.65
COL6A3-205ENST00000392004 JRKLQ9Y4A0 524 aa11.02□□□□□ -0.65
COL6A3-205ENST00000392004 POLR2AP24928 1970 aaKnown RBP11.02□□□□□ -0.65
COL6A3-205ENST00000392004 SIPA1L3O60292 1781 aaPredicted RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms