RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 RPA1P27694 616 aa15.12■□□□□ 0.01
RTF1-201ENST00000389629 FLT3P36888 993 aa15.12■□□□□ 0.01
RTF1-201ENST00000389629 RFC5P40937 340 aa15.12■□□□□ 0.01
RTF1-201ENST00000389629 ALDH18A1P54886 795 aaKnown RBP15.12■□□□□ 0.01
RTF1-201ENST00000389629 NOP14P78316 857 aaKnown RBP15.12■□□□□ 0.01
RTF1-201ENST00000389629 MED21Q13503 144 aa15.12■□□□□ 0.01
RTF1-201ENST00000389629 NFIXQ14938 502 aa15.12■□□□□ 0.01
RTF1-201ENST00000389629 DARS2Q6PI48 645 aaKnown RBP15.12■□□□□ 0.01
RTF1-201ENST00000389629 TTC25Q96NG3 672 aa15.12■□□□□ 0.01
RTF1-201ENST00000389629 LXNQ9BS40 222 aa15.12■□□□□ 0.01
RTF1-201ENST00000389629 DCDC2CA8MYV0 355 aa15.12■□□□□ 0.01
RTF1-201ENST00000389629 SMAD1Q15797 465 aaKnown RBP15.12■□□□□ 0.01
RTF1-201ENST00000389629 SERPINB12Q96P63 405 aa15.12■□□□□ 0.01
RTF1-201ENST00000389629 GGA2Q9UJY4 613 aa15.12■□□□□ 0.01
RTF1-201ENST00000389629 PPEF1O14829 653 aaPredicted RBP15.11■□□□□ 0.01
RTF1-201ENST00000389629 PTENP60484 403 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 ASPHQ12797 758 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 CCDC125Q86Z20 511 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 MAP7D3Q8IWC1 876 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 PRPF31Q8WWY3 499 aaKnown RBP15.11■□□□□ 0.01
RTF1-201ENST00000389629 RUSC1Q9BVN2 902 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 TSSK1BQ9BXA7 367 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 TTYH3Q9C0H2 523 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 H3BRJ5 948 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 RPS6KA4O75676 772 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 TJP3O95049 919 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 ARHGEF16Q5VV41 709 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 CEP170P1Q96L14 293 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 PURBQ96QR8 312 aaKnown RBP15.11■□□□□ 0.01
RTF1-201ENST00000389629 DDX3XO00571 662 aaKnown RBP eCLIP15.11■□□□□ 0.012e-15■■□□□ 11.6
RTF1-201ENST00000389629 RFX1P22670 979 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 SMARCA1P28370 1054 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 GIT2Q14161 759 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 MMEL1Q495T6 779 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 NT5DC3Q86UY8 548 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 SLC13A5Q86YT5 568 aaPredicted RBP15.11■□□□□ 0.01
RTF1-201ENST00000389629 PIK3R5Q8WYR1 880 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 ZSWIM1Q9BR11 485 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 IPO5O00410 1097 aaKnown RBP15.11■□□□□ 0.01
RTF1-201ENST00000389629 MCF2LO15068 1137 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 EPHB2P29323 1055 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 MAGEA4P43358 317 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 PSMC6P62333 389 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 ZNF394Q53GI3 561 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 NLRP9Q7RTR0 991 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 WDR75Q8IWA0 830 aaKnown RBP15.11■□□□□ 0.01
RTF1-201ENST00000389629 DAGLAQ9Y4D2 1042 aa15.11■□□□□ 0.01
RTF1-201ENST00000389629 ESRRGP62508 458 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 BTKQ06187 659 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 B4GALNT2Q8NHY0 566 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 MTBPQ96DY7 904 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 SMYD2Q9NRG4 433 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 ETAA1Q9NY74 926 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 SMG5Q9UPR3 1016 aaKnown RBP15.1■□□□□ 0.01
RTF1-201ENST00000389629 ZNF335Q9H4Z2 1342 aaPredicted RBP15.1■□□□□ 0.01
RTF1-201ENST00000389629 TAF1BQ53T94 588 aaPredicted RBP15.1■□□□□ 0.01
RTF1-201ENST00000389629 MTDHQ86UE4 582 aaKnown RBP15.1■□□□□ 0.01
RTF1-201ENST00000389629 ICA1LQ8NDH6 482 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 DCLRE1BQ9H816 532 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 NEU2Q9Y3R4 380 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 SNX3O60493 162 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 ATP9AO75110 1047 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 KRT37O76014 449 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 CBX6O95503 412 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 ATP4AP20648 1035 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 MAGED2Q9UNF1 606 aaPredicted RBP15.1■□□□□ 0.01
RTF1-201ENST00000389629 APOBEC2Q9Y235 224 aaKnown RBP15.1■□□□□ 0.01
RTF1-201ENST00000389629 CLRN2A0PK11 232 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 NOP56O00567 594 aaKnown RBP15.1■□□□□ 0.01
RTF1-201ENST00000389629 ADAMTS3O15072 1205 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 ALCAMQ13740 583 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 TMEM179Q6ZVK1 233 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 MMTAG2Q9BU76 263 aaKnown RBP15.1■□□□□ 0.01
RTF1-201ENST00000389629 HEY2Q9UBP5 337 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 TTLL3Q9Y4R7 772 aa15.1■□□□□ 0.01
RTF1-201ENST00000389629 MST1RQ04912 1400 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 O00370 1275 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 RPL21P46778 160 aaKnown RBP15.09■□□□□ 0.01
RTF1-201ENST00000389629 CACNA2D1P54289 1103 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 KRT39Q6A163 491 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 RHPN2Q8IUC4 686 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 SCYL1Q96KG9 808 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 MAGEA13PA6NCF6 341 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 RIPK2O43353 540 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 NPEPPSP55786 919 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 EPC2Q52LR7 807 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 A1CFQ9NQ94 594 aaKnown RBP15.09■□□□□ 0.01
RTF1-201ENST00000389629 SEPT9Q9UHD8 586 aaPredicted RBP15.09■□□□□ 0.01
RTF1-201ENST00000389629 A0A0A6YYK5 440 aaPredicted RBP15.09■□□□□ 0.01
RTF1-201ENST00000389629 A8MUI8 341 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 KRT16P08779 473 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 NPY5RQ15761 445 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 CRELD2Q6UXH1 353 aaPredicted RBP15.09■□□□□ 0.01
RTF1-201ENST00000389629 C2CD2Q9Y426 696 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 CES2O00748 559 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 PHEXP78562 749 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 TRIP10Q15642 601 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 NUDCD3Q8IVD9 361 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 KCTD6Q8NC69 237 aa15.09■□□□□ 0.01
RTF1-201ENST00000389629 SLC20A1Q8WUM9 679 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms