RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 CARSP49589 748 aaKnown RBP23.18■■□□□ 1.3
TRIM54-202ENST00000380075 PALB2Q86YC2 1186 aa23.18■■□□□ 1.3
TRIM54-202ENST00000380075 KLHL7Q8IXQ5 586 aa23.18■■□□□ 1.3
TRIM54-202ENST00000380075 AFAP1L1Q8TED9 768 aa23.18■■□□□ 1.3
TRIM54-202ENST00000380075 SH3GL2Q99962 352 aa23.18■■□□□ 1.3
TRIM54-202ENST00000380075 FAM204AQ9H8W3 233 aa23.18■■□□□ 1.3
TRIM54-202ENST00000380075 ZHX1Q9UKY1 873 aaPredicted RBP23.18■■□□□ 1.3
TRIM54-202ENST00000380075 ADGRA3Q8IWK6 1321 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 GOLGA8KD6RF30 607 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 DDX3YO15523 660 aaKnown RBP23.17■■□□□ 1.3
TRIM54-202ENST00000380075 PHACTR2O75167 634 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 LMAN1P49257 510 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 MAATS1Q7Z4T9 603 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 CCDC26Q8TAB7 109 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 HELQQ8TDG4 1101 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 SEMA4DQ92854 862 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 BICD1Q96G01 975 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 RUFY1Q96T51 708 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 MMP19Q99542 508 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 HINFPQ9BQA5 517 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 ZNF302Q9NR11 478 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 GJD2Q9UKL4 321 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 NFU1Q9UMS0 254 aa23.17■■□□□ 1.3
TRIM54-202ENST00000380075 ZNF233A6NK53 670 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 BHMG1C9JSJ3 638 aaPredicted RBP23.16■■□□□ 1.3
TRIM54-202ENST00000380075 STRNO43815 780 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 OATP04181 439 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 POLGP54098 1239 aaPredicted RBP23.16■■□□□ 1.3
TRIM54-202ENST00000380075 EMC2Q15006 297 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 ANKRD35Q8N283 1001 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 CASKIN2Q8WXE0 1202 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 GABRQQ9UN88 632 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 SART1O43290 800 aaKnown RBP23.16■■□□□ 1.3
TRIM54-202ENST00000380075 EXTL3O43909 919 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 ADORA2AP29274 412 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 USP8P40818 1118 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 GCNT1Q02742 428 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 GRB14Q14449 540 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 KCTD2Q14681 263 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 MORN1Q5T089 497 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 IFT81Q8WYA0 676 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 STYXL1Q9Y6J8 313 aa23.16■■□□□ 1.3
TRIM54-202ENST00000380075 SYNGAP1Q96PV0 1343 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 SGPL1O95470 568 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 PGK2P07205 417 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 ALDH5A1P51649 535 aaPredicted RBP23.15■■□□□ 1.3
TRIM54-202ENST00000380075 SOX10P56693 466 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 SP4Q02446 784 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 STRN3Q13033 797 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 PPFIA1Q13136 1202 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 PRPF4BQ13523 1007 aaKnown RBP23.15■■□□□ 1.3
TRIM54-202ENST00000380075 MTERF2Q49AM1 385 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 SV2AQ7L0J3 742 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 NOP9Q86U38 636 aaKnown RBP23.15■■□□□ 1.3
TRIM54-202ENST00000380075 KAT5Q92993 513 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 RPS6KC1Q96S38 1066 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 NIFKQ9BYG3 293 aaKnown RBP23.15■■□□□ 1.3
TRIM54-202ENST00000380075 DHX33Q9H6R0 707 aaKnown RBP23.15■■□□□ 1.3
TRIM54-202ENST00000380075 CTTNBP2NLQ9P2B4 639 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 TRIM17Q9Y577 477 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 HTTP42858 3142 aa23.15■■□□□ 1.3
TRIM54-202ENST00000380075 CENPFP49454 3210 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 IGKV6D-21A0A0A0MT36 114 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 ERICH4A6NGS2 130 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 PIGRP01833 764 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 CHRNB2P17787 502 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 NAMPTP43490 491 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 LIG4P49917 911 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 PDE6CP51160 858 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 CLDN10P78369 228 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 PRKCZQ05513 592 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 TAF3Q5VWG9 929 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 TAS1R3Q7RTX0 852 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 ABRAQ8N0Z2 381 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 COG5Q9UP83 839 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 CASP8AP2Q9UKL3 1982 aa23.14■■□□□ 1.3
TRIM54-202ENST00000380075 SLC15A5A6NIM6 579 aa23.14■■□□□ 1.29
TRIM54-202ENST00000380075 CYP26A1O43174 497 aa23.14■■□□□ 1.29
TRIM54-202ENST00000380075 CDR2Q01850 454 aa23.14■■□□□ 1.29
TRIM54-202ENST00000380075 SP2Q02086 613 aa23.14■■□□□ 1.29
TRIM54-202ENST00000380075 PSMD6Q15008 389 aa23.14■■□□□ 1.29
TRIM54-202ENST00000380075 ARHGEF6Q15052 776 aa23.14■■□□□ 1.29
TRIM54-202ENST00000380075 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.14■■□□□ 1.29
TRIM54-202ENST00000380075 CYFIP1Q7L576 1253 aa23.14■■□□□ 1.29
TRIM54-202ENST00000380075 UBL4BQ8N7F7 174 aa23.14■■□□□ 1.29
TRIM54-202ENST00000380075 TAS1R2Q8TE23 839 aa23.14■■□□□ 1.29
TRIM54-202ENST00000380075 AP1M1Q9BXS5 423 aa23.14■■□□□ 1.29
TRIM54-202ENST00000380075 SRRDQ9UH36 339 aa23.14■■□□□ 1.29
TRIM54-202ENST00000380075 LCTP09848 1927 aa23.14■■□□□ 1.29
TRIM54-202ENST00000380075 CYP11B1P15538 503 aa23.13■■□□□ 1.29
TRIM54-202ENST00000380075 RFC5P40937 340 aa23.13■■□□□ 1.29
TRIM54-202ENST00000380075 FLT3LGP49771 235 aa23.13■■□□□ 1.29
TRIM54-202ENST00000380075 SLFN12LQ6IEE8 588 aa23.13■■□□□ 1.29
TRIM54-202ENST00000380075 TSEN2Q8NCE0 465 aaKnown RBP23.13■■□□□ 1.29
TRIM54-202ENST00000380075 CALCOCO1Q9P1Z2 691 aa23.13■■□□□ 1.29
TRIM54-202ENST00000380075 PPME1Q9Y570 386 aa23.13■■□□□ 1.29
TRIM54-202ENST00000380075 GOLGA6L10A0A0M3HER8 536 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 ESYT3A0FGR9 886 aa23.12■■□□□ 1.29
TRIM54-202ENST00000380075 ZSCAN5CA6NGD5 496 aaPredicted RBP23.12■■□□□ 1.29
TRIM54-202ENST00000380075 GNRH1P01148 92 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms