RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 MADDQ8WXG6 1647 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 C3orf70A6NLC5 250 aaPredicted RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 hCG_1984214I3L0E3 225 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 FGGP02679 453 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 SOAT1P35610 550 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 ADD1P35611 737 aaKnown RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 RFX3P48380 749 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 ZNF445P59923 1031 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 PEG10Q86TG7 708 aaKnown RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 IFNL3Q8IZI9 196 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 SCFD2Q8WU76 684 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 S100A13Q99584 98 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 KLHL25Q9H0H3 589 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 POLR1DQ9Y2S0 133 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 CLASP2O75122 1294 aaKnown RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 ECDO95905 644 aaPredicted RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 HOXB7P09629 217 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 RHAGQ02094 409 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 EFL1Q7Z2Z2 1120 aaKnown RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 CAMKK1Q8N5S9 505 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 SPIRE2Q8WWL2 714 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 DTNBP1Q96EV8 351 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 KCNK16Q96T55 309 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 PDCD10Q9BUL8 212 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 TUBGCP4Q9UGJ1 667 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 ANAPC2Q9UJX6 822 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 TMCC3Q9ULS5 477 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 COQ6Q9Y2Z9 468 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 MLH3Q9UHC1 1453 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 TTLL1O95922 423 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 NUP107P57740 925 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.18□□□□□ -0.62
RTN3-206ENST00000377819 GCKRQ14397 625 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 ZNF699Q32M78 642 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 GIMAP8Q8ND71 665 aaPredicted RBP11.18□□□□□ -0.62
RTN3-206ENST00000377819 SYMPKQ92797 1274 aaKnown RBP11.18□□□□□ -0.62
RTN3-206ENST00000377819 SLC13A1Q9BZW2 595 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 CAPN10Q9HC96 672 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 SNX24Q9Y343 169 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 CLRN2A0PK11 232 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 PSMD12O00232 456 aaPredicted RBP11.18□□□□□ -0.62
RTN3-206ENST00000377819 H2AFYO75367 372 aaKnown RBP11.18□□□□□ -0.62
RTN3-206ENST00000377819 CXCR5P32302 372 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 TMEM132BQ14DG7 1078 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 PALB2Q86YC2 1186 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 GRAMD1AQ96CP6 724 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 USP28Q96RU2 1077 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 UNC45AQ9H3U1 944 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 RPS6KB2Q9UBS0 482 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 AOX1Q06278 1338 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 SMIM31A0A1B0GVY4 71 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 CCDC189A1A4V9 331 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 DYNC1LI2O43237 492 aaPredicted RBP11.18□□□□□ -0.62
RTN3-206ENST00000377819 STRNO43815 780 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 CLTBP09497 229 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 PTPN1P18031 435 aaKnown RBP11.18□□□□□ -0.62
RTN3-206ENST00000377819 AKAP5P24588 427 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 GPC1P35052 558 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 MAPKAPK2P49137 400 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 LRRC41Q15345 812 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 GSTA3Q16772 222 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 CCDC184Q52MB2 194 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 WLSQ5T9L3 541 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 HOMEZQ8IX15 550 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 RIC8BQ9NVN3 520 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 ADAMTS1Q9UHI8 967 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 ADAM30Q9UKF2 790 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 AP3B2Q13367 1082 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 EDRF1Q3B7T1 1238 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 ANKRD40Q6AI12 368 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 TIGD7Q6NT04 549 aaPredicted RBP11.18□□□□□ -0.62
RTN3-206ENST00000377819 OMA1Q96E52 524 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 CALR3Q96L12 384 aaKnown RBP11.18□□□□□ -0.62
RTN3-206ENST00000377819 COPS7BQ9H9Q2 264 aaPredicted RBP11.18□□□□□ -0.62
RTN3-206ENST00000377819 AVENQ9NQS1 362 aaPredicted RBP11.18□□□□□ -0.62
RTN3-206ENST00000377819 KCNH4Q9UQ05 1017 aa11.18□□□□□ -0.62
RTN3-206ENST00000377819 MAP3K5Q99683 1374 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 PGK2P07205 417 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 MARK3P27448 753 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 EIF4A3P38919 411 aaKnown RBP11.17□□□□□ -0.62
RTN3-206ENST00000377819 STAT3P40763 770 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 ALDH6A1Q02252 535 aaKnown RBP11.17□□□□□ -0.62
RTN3-206ENST00000377819 CDC16Q13042 620 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 ARMCX4Q5H9R4 360 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 PTRHD1Q6GMV3 140 aaKnown RBP11.17□□□□□ -0.62
RTN3-206ENST00000377819 CAPRIN2Q6IMN6 1127 aaKnown RBP11.17□□□□□ -0.62
RTN3-206ENST00000377819 TNIP2Q8NFZ5 429 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 TNIP3Q96KP6 325 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 MAGEB10Q96LZ2 347 aaPredicted RBP11.17□□□□□ -0.62
RTN3-206ENST00000377819 PANX2Q96RD6 677 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 APPL1Q9UKG1 709 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.17□□□□□ -0.62
RTN3-206ENST00000377819 SH3GLB1Q9Y371 365 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 ATP9BO43861 1147 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 CCNE1P24864 410 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 TMC4Q7Z404 712 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 STX12Q86Y82 276 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 STAG2Q8N3U4 1231 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 FAM162AQ96A26 154 aa11.17□□□□□ -0.62
RTN3-206ENST00000377819 PNKPQ96T60 521 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms