RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 RPS9P46781 194 aaKnown RBP15.35■□□□□ 0.05
VPS29-201ENST00000360579 NTHL1P78549 312 aa15.35■□□□□ 0.05
VPS29-201ENST00000360579 CYP4A11Q02928 519 aa15.35■□□□□ 0.05
VPS29-201ENST00000360579 CTTNQ14247 550 aaKnown RBP15.35■□□□□ 0.05
VPS29-201ENST00000360579 CEP57Q86XR8 500 aa15.35■□□□□ 0.05
VPS29-201ENST00000360579 TPH2Q8IWU9 490 aa15.35■□□□□ 0.05
VPS29-201ENST00000360579 LNX1Q8TBB1 728 aaPredicted RBP15.35■□□□□ 0.05
VPS29-201ENST00000360579 HAS1Q92839 578 aa15.35■□□□□ 0.05
VPS29-201ENST00000360579 CLDN23Q96B33 292 aa15.35■□□□□ 0.05
VPS29-201ENST00000360579 ZNF274Q96GC6 653 aaPredicted RBP15.35■□□□□ 0.05
VPS29-201ENST00000360579 PRIMPOLQ96LW4 560 aa15.35■□□□□ 0.05
VPS29-201ENST00000360579 ANKEF1Q9NU02 776 aa15.35■□□□□ 0.05
VPS29-201ENST00000360579 KLK14Q9P0G3 267 aa15.35■□□□□ 0.05
VPS29-201ENST00000360579 MTF2Q9Y483 593 aaPredicted RBP15.35■□□□□ 0.05
VPS29-201ENST00000360579 ACACBO00763 2458 aa15.35■□□□□ 0.05
VPS29-201ENST00000360579 ZBTB39O15060 712 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 LILRB5O75023 590 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 ECI2O75521 394 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 SLITRK3O94933 977 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 LYPLA2O95372 231 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 ATXN1P54253 815 aaKnown RBP15.34■□□□□ 0.05
VPS29-201ENST00000360579 SPIRE1Q08AE8 756 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 PABPC1LQ4VXU2 614 aaKnown RBP15.34■□□□□ 0.05
VPS29-201ENST00000360579 AXDND1Q5T1B0 1012 aaPredicted RBP15.34■□□□□ 0.05
VPS29-201ENST00000360579 ZNF852Q6ZMS4 543 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 RUFY3Q7L099 469 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 ITFG1Q8TB96 612 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 SLC7A14Q8TBB6 771 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 ASAP3Q8TDY4 903 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 RABGGTAQ92696 567 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 NELL1Q92832 810 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 PHF12Q96QT6 1004 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 KXD1Q9BQD3 176 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 RTKNQ9BST9 563 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 PRMT7Q9NVM4 692 aaPredicted RBP15.34■□□□□ 0.05
VPS29-201ENST00000360579 GDE1Q9NZC3 331 aa15.34■□□□□ 0.05
VPS29-201ENST00000360579 DAXXQ9UER7 740 aaPredicted RBP15.34■□□□□ 0.05
VPS29-201ENST00000360579 TDRD15B5MCY1 1934 aaKnown RBP15.34■□□□□ 0.05
VPS29-201ENST00000360579 CASTOR2A6NHX0 329 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 B4GALT5O43286 388 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 CDKL5O76039 1030 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 KIF4AO95239 1232 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 THP07101 528 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 GLRA2P23416 452 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 RAB33AQ14088 237 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 TPRG1Q6ZUI0 275 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 NPAS3Q8IXF0 933 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 HASPINQ8TF76 798 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 PAAF1Q9BRP4 392 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 GMEB2Q9UKD1 530 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 KCNJ14Q9UNX9 436 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 KMT2BQ9UMN6 2715 aaPredicted RBP15.33■□□□□ 0.04
VPS29-201ENST00000360579 MIA3Q5JRA6 1907 aa15.33■□□□□ 0.04
VPS29-201ENST00000360579 REC8O95072 547 aa15.32■□□□□ 0.04
VPS29-201ENST00000360579 CD72P21854 359 aa15.32■□□□□ 0.04
VPS29-201ENST00000360579 TARSP26639 723 aaKnown RBP15.32■□□□□ 0.04
VPS29-201ENST00000360579 NRLP54845 237 aa15.32■□□□□ 0.04
VPS29-201ENST00000360579 ADCY1Q08828 1119 aa15.32■□□□□ 0.04
VPS29-201ENST00000360579 TOB2Q14106 344 aaPredicted RBP15.32■□□□□ 0.04
VPS29-201ENST00000360579 PPP2R5DQ14738 602 aa15.32■□□□□ 0.04
VPS29-201ENST00000360579 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.32■□□□□ 0.04
VPS29-201ENST00000360579 PIK3AP1Q6ZUJ8 805 aa15.32■□□□□ 0.04
VPS29-201ENST00000360579 CDR2LQ86X02 465 aaPredicted RBP15.32■□□□□ 0.04
VPS29-201ENST00000360579 AIFM3Q96NN9 605 aa15.32■□□□□ 0.04
VPS29-201ENST00000360579 HSD17B14Q9BPX1 270 aa15.32■□□□□ 0.04
VPS29-201ENST00000360579 EIF2AK1Q9BQI3 630 aaKnown RBP15.32■□□□□ 0.04
VPS29-201ENST00000360579 IER2Q9BTL4 223 aa15.32■□□□□ 0.04
VPS29-201ENST00000360579 POLR3FQ9H1D9 316 aaPredicted RBP15.32■□□□□ 0.04
VPS29-201ENST00000360579 PRMT8Q9NR22 394 aaPredicted RBP15.32■□□□□ 0.04
VPS29-201ENST00000360579 USP18Q9UMW8 372 aa15.32■□□□□ 0.04
VPS29-201ENST00000360579 MRPS23Q9Y3D9 190 aaKnown RBP15.32■□□□□ 0.04
VPS29-201ENST00000360579 CYP46A1Q9Y6A2 500 aa15.32■□□□□ 0.04
VPS29-201ENST00000360579 ZFHX4Q86UP3 3567 aa15.32■□□□□ 0.04
VPS29-201ENST00000360579 MYH15Q9Y2K3 1946 aa15.31■□□□□ 0.04
VPS29-201ENST00000360579 N4BP3O15049 544 aa15.31■□□□□ 0.04
VPS29-201ENST00000360579 OR1D2P34982 312 aa15.31■□□□□ 0.04
VPS29-201ENST00000360579 CENPQQ7L2Z9 268 aaPredicted RBP15.31■□□□□ 0.04
VPS29-201ENST00000360579 ZBTB8OSQ8IWT0 167 aa15.31■□□□□ 0.04
VPS29-201ENST00000360579 DNASE1L2Q92874 299 aa15.31■□□□□ 0.04
VPS29-201ENST00000360579 ZSWIM6Q9HCJ5 1215 aa15.31■□□□□ 0.04
VPS29-201ENST00000360579 AVENQ9NQS1 362 aaPredicted RBP15.31■□□□□ 0.04
VPS29-201ENST00000360579 DNMT3BQ9UBC3 853 aaKnown RBP15.31■□□□□ 0.04
VPS29-201ENST00000360579 CACNG4Q9UBN1 327 aa15.31■□□□□ 0.04
VPS29-201ENST00000360579 RAB23Q9ULC3 237 aa15.31■□□□□ 0.04
VPS29-201ENST00000360579 PCDHA12Q9UN75 941 aa15.31■□□□□ 0.04
VPS29-201ENST00000360579 SPTBN2O15020 2390 aa15.31■□□□□ 0.04
VPS29-201ENST00000360579 LRRIQ4A6NIV6 560 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 MAN2B1O00754 1011 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 PTGESO14684 152 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 ADAM12O43184 909 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 KRT37O76014 449 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 XRCC6P12956 609 aaKnown RBP eCLIP15.3■□□□□ 0.04
VPS29-201ENST00000360579 FGFR3P22607 806 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 RARRES1P49788 294 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 FAM187BQ17R55 369 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 TMEM132AQ24JP5 1023 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 MAMSTRQ6ZN01 415 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 MCPH1Q8NEM0 835 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 ELSPBP1Q96BH3 223 aa15.3■□□□□ 0.04
VPS29-201ENST00000360579 ADPGKQ9BRR6 497 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms