RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 APOBEC2Q9Y235 224 aaKnown RBP16.46■□□□□ 0.23
PTPRF-201ENST00000359947 NCOA4Q13772 614 aa16.46■□□□□ 0.23
PTPRF-201ENST00000359947 C11orf96Q7Z7L8 435 aa16.46■□□□□ 0.23
PTPRF-201ENST00000359947 UBA3Q8TBC4 463 aa16.46■□□□□ 0.23
PTPRF-201ENST00000359947 POLR3CQ9BUI4 534 aaPredicted RBP16.46■□□□□ 0.23
PTPRF-201ENST00000359947 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.46■□□□□ 0.23
PTPRF-201ENST00000359947 KPNA7A9QM74 516 aa16.46■□□□□ 0.22
PTPRF-201ENST00000359947 CHGBP05060 677 aa16.46■□□□□ 0.22
PTPRF-201ENST00000359947 C10orf120Q5SQS8 335 aa16.46■□□□□ 0.22
PTPRF-201ENST00000359947 NFRKBQ6P4R8 1299 aa16.46■□□□□ 0.22
PTPRF-201ENST00000359947 ANKMY2Q8IV38 441 aa16.46■□□□□ 0.22
PTPRF-201ENST00000359947 SLC25A41Q8N5S1 370 aa16.46■□□□□ 0.22
PTPRF-201ENST00000359947 SLC7A14Q8TBB6 771 aa16.46■□□□□ 0.22
PTPRF-201ENST00000359947 PVALEFA0A1B0GWK0 134 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 ORC4O43929 436 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 KRT14P02533 472 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 WDR75Q8IWA0 830 aaKnown RBP16.45■□□□□ 0.22
PTPRF-201ENST00000359947 PITPNM3Q9BZ71 974 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 MORF4L2Q15014 288 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 ATF7IP2Q5U623 682 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 C18orf8Q96DM3 657 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 VCPKMTQ9H867 229 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 FGFR1OP2Q9NVK5 253 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 C17orf102A2RUQ5 167 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 GTF2A2P52657 109 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 CSE1LP55060 971 aaKnown RBP16.45■□□□□ 0.22
PTPRF-201ENST00000359947 EIF3EP60228 445 aaKnown RBP16.45■□□□□ 0.22
PTPRF-201ENST00000359947 ADCY2Q08462 1091 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 YME1L1Q96TA2 773 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 UNC45AQ9H3U1 944 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 ERAP1Q9NZ08 941 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 PFASO15067 1338 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 E2F8A0AVK6 867 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 DGAT1O75907 488 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 WEE2P0C1S8 567 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 GRAMD1BQ3KR37 738 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 CDKL3Q8IVW4 592 aaPredicted RBP16.45■□□□□ 0.22
PTPRF-201ENST00000359947 ATPAF2Q8N5M1 289 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 FAM151AQ8WW52 585 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 DCTN4Q9UJW0 460 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 PCDHB8Q9UN66 801 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 SPATA31E1Q6ZUB1 1445 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 EPHX2P34913 555 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 BLVRAP53004 296 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 CLMNQ96JQ2 1002 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 ELAC2Q9BQ52 826 aaKnown RBP16.45■□□□□ 0.22
PTPRF-201ENST00000359947 TRIM15Q9C019 465 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 CAPN10Q9HC96 672 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 CPA4Q9UI42 421 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 CAPN11Q9UMQ6 739 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 SPARCL1Q14515 664 aa16.45■□□□□ 0.22
PTPRF-201ENST00000359947 SPDYE5A6NIY4 337 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 NR1D1P20393 614 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 SPDYE7PQ495Y7 208 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 ZC2HC1CQ53FD0 456 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-201ENST00000359947 RHOT1Q8IXI2 618 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 ZNF579Q8NAF0 562 aaKnown RBP16.44■□□□□ 0.22
PTPRF-201ENST00000359947 TRIM55Q9BYV6 548 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 GFAPP14136 432 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 KIZQ2M2Z5 673 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 ATG9AQ7Z3C6 839 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 NAGPAQ9UK23 515 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 PYGLP06737 847 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 MEI1Q5TIA1 1274 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 DDX56Q9NY93 547 aaKnown RBP16.44■□□□□ 0.22
PTPRF-201ENST00000359947 ZNF197O14709 1029 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 SLC25A27O95847 323 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 SCP2P22307 547 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 TCF7P36402 384 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-201ENST00000359947 ARSEP51690 589 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 TBC1D1Q86TI0 1168 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-201ENST00000359947 TTC39CQ8N584 583 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 PPHLN1Q8NEY8 458 aaKnown RBP16.44■□□□□ 0.22
PTPRF-201ENST00000359947 CEP19Q96LK0 163 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 ADA2Q9NZK5 511 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 DCAF6Q58WW2 860 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 STYK1Q6J9G0 422 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 REEP2Q9BRK0 252 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 TRPV6Q9H1D0 765 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 A2ML1A8K2U0 1454 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 NT5C2P49902 561 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 CDC42EP1Q00587 391 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 CUL1Q13616 776 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 SNX17Q15036 470 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 TAF11Q15544 211 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 HASPINQ8TF76 798 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 MCEEQ96PE7 176 aa16.44■□□□□ 0.22
PTPRF-201ENST00000359947 MIF4GDA9UHW6 222 aaKnown RBP16.43■□□□□ 0.22
PTPRF-201ENST00000359947 TYK2P29597 1187 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 ASAP3Q8TDY4 903 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 KIFC3Q9BVG8 833 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 PDGFRAP16234 1089 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 HOXA7P31268 230 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-201ENST00000359947 ABHD8Q96I13 439 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 ALG13Q9NP73 1137 aaKnown RBP16.43■□□□□ 0.22
PTPRF-201ENST00000359947 FAM205CA6NFA0 338 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 MAPK13O15264 365 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 DNAJB2P25686 324 aa16.43■□□□□ 0.22
PTPRF-201ENST00000359947 ZC3H12BQ5HYM0 836 aaKnown RBP16.43■□□□□ 0.22
PTPRF-201ENST00000359947 ANKS3Q6ZW76 656 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms