RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 NFIL3Q16649 462 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 TCEAL5Q5H9L2 206 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 FAM26FQ5R3K3 315 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 C6orf10Q5SRN2 563 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 LRRC8BQ6P9F7 803 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 RUNDC3BQ96NL0 473 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 PIGSQ96S52 555 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 PUS7LQ9H0K6 701 aaKnown RBP10.29□□□□□ -0.76
CHD3-202ENST00000358181 DHX35Q9H5Z1 703 aaKnown RBP10.29□□□□□ -0.76
CHD3-202ENST00000358181 DNMT1P26358 1616 aaKnown RBP10.29□□□□□ -0.76
CHD3-202ENST00000358181 GMFGO60234 142 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 CYTH1Q15438 398 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 CCDC81Q6ZN84 652 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 DSCC1Q9BVC3 393 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 TRIM62Q9BVG3 475 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 MIR1-1HGQ9H1L0 117 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 TOPORSQ9NS56 1045 aaPredicted RBP10.29□□□□□ -0.76
CHD3-202ENST00000358181 AKAP7Q9P0M2 348 aaPredicted RBP10.29□□□□□ -0.76
CHD3-202ENST00000358181 LRCH1Q9Y2L9 728 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 PSMD12O00232 456 aaPredicted RBP10.29□□□□□ -0.76
CHD3-202ENST00000358181 RNF103O00237 685 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 APOA1P02647 267 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 BMP3P12645 472 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 SEPT12Q8IYM1 358 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 KIFC1Q9BW19 673 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 TMEM63CQ9P1W3 806 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 KDM2BQ8NHM5 1336 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 PPP6R2O75170 966 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 HIRAP54198 1017 aaPredicted RBP10.28□□□□□ -0.76
CHD3-202ENST00000358181 CARD9Q9H257 536 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 CNGB3Q9NQW8 809 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 IARS2Q9NSE4 1012 aaKnown RBP10.28□□□□□ -0.76
CHD3-202ENST00000358181 ZMYM6O95789 1325 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 KPNA7A9QM74 516 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 ANKRD65E5RJM6 399 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 GSTM1P09488 218 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 CYP2B6P20813 491 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 SMARCA1P28370 1054 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 SLC7A5Q01650 507 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 SRSF11Q05519 484 aaKnown RBP10.28□□□□□ -0.76
CHD3-202ENST00000358181 LPIN1Q14693 890 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 CENPUQ71F23 418 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 PIGOQ8TEQ8 1089 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 MLXIPLQ9NP71 852 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 ADCY9O60503 1353 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 GUCY1A2P33402 732 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 PTRHD1Q6GMV3 140 aaKnown RBP10.28□□□□□ -0.76
CHD3-202ENST00000358181 CCSAPQ6IQ19 270 aaPredicted RBP10.28□□□□□ -0.76
CHD3-202ENST00000358181 LRRC74BQ6ZQY2 392 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 DENND6AQ8IWF6 608 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 BCAS4Q8TDM0 211 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 CLIP3Q96DZ5 547 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 AIFM3Q96NN9 605 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 DIABLOQ9NR28 239 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 MTRF1O75570 445 aaKnown RBP10.28□□□□□ -0.76
CHD3-202ENST00000358181 HLA-DQA2P01906 255 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 MRPS25P82663 173 aaKnown RBP10.28□□□□□ -0.76
CHD3-202ENST00000358181 EFHC2Q5JST6 749 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 OLFML2BQ68BL8 750 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 CLEC4FQ8N1N0 589 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 KRT84Q9NSB2 600 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 POLG2Q9UHN1 485 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 SPACA6W5XKT8 324 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 CLDN3O15551 220 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 H2AFYO75367 372 aaKnown RBP10.28□□□□□ -0.76
CHD3-202ENST00000358181 PMS2P54278 862 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 BEND6Q5SZJ8 279 aaPredicted RBP10.28□□□□□ -0.76
CHD3-202ENST00000358181 CCDC149Q6ZUS6 474 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 VPS37AQ8NEZ2 397 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 FAM213AQ9BRX8 229 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 PLEKHA5Q9HAU0 1116 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 PSD3Q9NYI0 1048 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 NCKAP1LP55160 1127 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 TUBB2AQ13885 445 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 PIGBQ92521 554 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 BTBD9Q96Q07 612 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 TUBB2BQ9BVA1 445 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 STK17AQ9UEE5 414 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 TRIM33Q9UPN9 1127 aa10.28□□□□□ -0.76
CHD3-202ENST00000358181 H0Y626 953 aa10.27□□□□□ -0.76
CHD3-202ENST00000358181 TSPAN9O75954 239 aa10.27□□□□□ -0.76
CHD3-202ENST00000358181 GPC1P35052 558 aa10.27□□□□□ -0.76
CHD3-202ENST00000358181 SH3BGRP55822 239 aaPredicted RBP10.27□□□□□ -0.76
CHD3-202ENST00000358181 CCDC15Q0P6D6 951 aa10.27□□□□□ -0.76
CHD3-202ENST00000358181 SNRNP48Q6IEG0 339 aaKnown RBP10.27□□□□□ -0.76
CHD3-202ENST00000358181 PABPC5Q96DU9 382 aaKnown RBP10.27□□□□□ -0.76
CHD3-202ENST00000358181 SH3GL2Q99962 352 aa10.27□□□□□ -0.76
CHD3-202ENST00000358181 PRKD2Q9BZL6 878 aa10.27□□□□□ -0.76
CHD3-202ENST00000358181 SYNPO2Q9UMS6 1093 aa10.27□□□□□ -0.76
CHD3-202ENST00000358181 RBMXL2O75526 392 aaKnown RBP10.27□□□□□ -0.77
CHD3-202ENST00000358181 PDE8BO95263 885 aa10.27□□□□□ -0.77
CHD3-202ENST00000358181 MDM2Q00987 491 aaPredicted RBP10.27□□□□□ -0.77
CHD3-202ENST00000358181 SUSD4Q5VX71 490 aa10.27□□□□□ -0.77
CHD3-202ENST00000358181 BRINP3Q76B58 766 aa10.27□□□□□ -0.77
CHD3-202ENST00000358181 BHMT2Q9H2M3 363 aa10.27□□□□□ -0.77
CHD3-202ENST00000358181 EML4Q9HC35 981 aaKnown RBP10.27□□□□□ -0.77
CHD3-202ENST00000358181 PIM2Q9P1W9 311 aa10.27□□□□□ -0.77
CHD3-202ENST00000358181 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.27□□□□□ -0.77
CHD3-202ENST00000358181 F8W810 466 aa10.27□□□□□ -0.77
CHD3-202ENST00000358181 NDUFS2O75306 463 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms