RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 BIRC2Q13490 618 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 TKFCQ3LXA3 575 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 PALM2Q8IXS6 379 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 TTLL6Q8N841 843 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 NETO2Q8NC67 525 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 NUP98P52948 1817 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 GH1P01241 217 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 PLS3P13797 630 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 SAT1P21673 171 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 SMARCA1P28370 1054 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 GNA15P30679 374 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 RCN2Q14257 317 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 SETDB1Q15047 1291 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 P3H1Q32P28 736 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 SLC13A5Q86YT5 568 aaPredicted RBP12.72□□□□□ -0.37
USP1-201ENST00000339950 EMC1Q8N766 993 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 PRELID2Q8N945 189 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 RSAD2Q8WXG1 361 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 SLC7A3Q8WY07 619 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 LENG9Q96B70 501 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 HSD17B14Q9BPX1 270 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 YIPF3Q9GZM5 350 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 CDC42EP4Q9H3Q1 356 aaKnown RBP12.72□□□□□ -0.37
USP1-201ENST00000339950 VAV3Q9UKW4 847 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 TPX2Q9ULW0 747 aaKnown RBP12.72□□□□□ -0.37
USP1-201ENST00000339950 HEY1Q9Y5J3 304 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 SYNGAP1Q96PV0 1343 aa12.72□□□□□ -0.37
USP1-201ENST00000339950 CCDC195A0A1B0GUA6 201 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 CHUKO15111 745 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 TMEM191BP0C7N4 346 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 ADRA2BP18089 450 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 CHKAP35790 457 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 TRIM50Q86XT4 487 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 SYN2Q92777 582 aaPredicted RBP12.71□□□□□ -0.37
USP1-201ENST00000339950 TGS1Q96RS0 853 aaKnown RBP12.71□□□□□ -0.37
USP1-201ENST00000339950 ZSWIM1Q9BR11 485 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 PITPNM3Q9BZ71 974 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 GRIN2DO15399 1336 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 WDR64B1ANS9 1081 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 SNHG28P0DPA3 235 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 BRD2P25440 801 aaKnown RBP12.71□□□□□ -0.37
USP1-201ENST00000339950 COILP38432 576 aaPredicted RBP12.71□□□□□ -0.37
USP1-201ENST00000339950 ATP11AP98196 1134 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 PPP6R3Q5H9R7 873 aaPredicted RBP12.71□□□□□ -0.37
USP1-201ENST00000339950 MCEEQ96PE7 176 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 MAK16Q9BXY0 300 aaKnown RBP12.71□□□□□ -0.37
USP1-201ENST00000339950 STMN4Q9H169 189 aaPredicted RBP12.71□□□□□ -0.37
USP1-201ENST00000339950 KIF9Q9HAQ2 790 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 ABCF3Q9NUQ8 709 aa12.71□□□□□ -0.37
USP1-201ENST00000339950 ZNF142P52746 1687 aaPredicted RBP12.71□□□□□ -0.38
USP1-201ENST00000339950 ATP2A1O14983 1001 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 RTN2O75298 545 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 NR3C2P08235 984 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 HSPA9P38646 679 aaKnown RBP12.71□□□□□ -0.38
USP1-201ENST00000339950 ORC2Q13416 577 aaPredicted RBP12.71□□□□□ -0.38
USP1-201ENST00000339950 DNAJC24Q6P3W2 148 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 FMNL3Q8IVF7 1028 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 HIPK4Q8NE63 616 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.71□□□□□ -0.38
USP1-201ENST00000339950 TTC17Q96AE7 1141 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 SH3GL2Q99962 352 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 TUFT1Q9NNX1 390 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 RBAKQ9NYW8 714 aaPredicted RBP12.71□□□□□ -0.38
USP1-201ENST00000339950 PCDHA2Q9Y5H9 948 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 CCDC78A2IDD5 438 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 H7C0C1 242 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 PHF2O75151 1096 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 HLA-DRAP01903 254 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 ATP5OP48047 213 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 ARSEP51690 589 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 TTC27Q6P3X3 843 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 ACTRT1Q8TDG2 376 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 POLR3CQ9BUI4 534 aaPredicted RBP12.71□□□□□ -0.38
USP1-201ENST00000339950 SIX2Q9NPC8 291 aa12.71□□□□□ -0.38
USP1-201ENST00000339950 PIH1D1Q9NWS0 290 aaKnown RBP12.71□□□□□ -0.38
USP1-201ENST00000339950 MARCOQ9UEW3 520 aaPredicted RBP12.71□□□□□ -0.38
USP1-201ENST00000339950 ZC3H4Q9UPT8 1303 aaKnown RBP12.7□□□□□ -0.38
USP1-201ENST00000339950 EGFRP00533 1210 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 GJB1P08034 283 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 NBPF12Q5TAG4 269 aaPredicted RBP12.7□□□□□ -0.38
USP1-201ENST00000339950 RFX6Q8HWS3 928 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 RBM15Q96T37 977 aaKnown RBP eCLIP12.7□□□□□ -0.38
USP1-201ENST00000339950 MTFR1LQ9H019 292 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 PABPC3Q9H361 631 aaKnown RBP12.7□□□□□ -0.38
USP1-201ENST00000339950 ETNK1Q9HBU6 452 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 NGRNQ9NPE2 291 aaKnown RBP12.7□□□□□ -0.38
USP1-201ENST00000339950 SIPA1L3O60292 1781 aaPredicted RBP12.7□□□□□ -0.38
USP1-201ENST00000339950 PSMD10O75832 226 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 CHRNA3P32297 505 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 CLK2P49760 499 aaKnown RBP12.7□□□□□ -0.38
USP1-201ENST00000339950 PDIA2Q13087 525 aaKnown RBP12.7□□□□□ -0.38
USP1-201ENST00000339950 SPRED3Q2MJR0 410 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 CRY2Q49AN0 593 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 C6orf118Q5T5N4 469 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 DCAF12L1Q5VU92 463 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 TMEM130Q8N3G9 435 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 SPDL1Q96EA4 605 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 CFAP36Q96G28 342 aa12.7□□□□□ -0.38
USP1-201ENST00000339950 TRIM6Q9C030 488 aaPredicted RBP12.7□□□□□ -0.38
USP1-201ENST00000339950 AGO2Q9UKV8 859 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms