RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 GPC5P78333 572 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 KIAA1755Q5JYT7 1200 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 PPTC7Q8NI37 304 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 CNOT8Q9UFF9 292 aaKnown RBP10.83□□□□□ -0.68
USP54-201ENST00000339859 DDX20Q9UHI6 824 aaKnown RBP10.83□□□□□ -0.68
USP54-201ENST00000339859 SMIM23A6NLE4 172 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 FAM86B1E9PN63 330 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 FAM86B2P0C5J1 330 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 CREMQ03060 361 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 CFAP157Q5JU67 520 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 LBX2Q6XYB7 198 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 DESI2Q9BSY9 194 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 COL1A2P08123 1366 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 ELNP15502 786 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 CYP4A22Q5TCH4 519 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 MICALCLQ6ZW33 695 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 OTOP1Q7RTM1 612 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 METTL16Q86W50 562 aaKnown RBP10.82□□□□□ -0.68
USP54-201ENST00000339859 TSC1Q92574 1164 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 NUP188Q5SRE5 1749 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 C5P01031 1676 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 AOC2O75106 756 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 GHRP10912 638 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 GTF2H1P32780 548 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 CXCL17Q6UXB2 119 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 VPS37BQ9H9H4 285 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 CREBZFQ9NS37 354 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 DIS3Q9Y2L1 958 aaKnown RBP10.82□□□□□ -0.68
USP54-201ENST00000339859 LRRD1A4D1F6 860 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 SPATA31C2B4DYI2 1134 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 C2CD2LO14523 706 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 PARNO95453 639 aaKnown RBP10.82□□□□□ -0.68
USP54-201ENST00000339859 PPARGP37231 505 aaPredicted RBP10.82□□□□□ -0.68
USP54-201ENST00000339859 FMO5P49326 533 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 CRHR2Q13324 411 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 SLC27A1Q6PCB7 646 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 ADSSL1Q8N142 457 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 RAB3IL1Q8TBN0 382 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 ZNF512Q96ME7 567 aaPredicted RBP10.82□□□□□ -0.68
USP54-201ENST00000339859 KIFC3Q9BVG8 833 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 PLIN4Q96Q06 1357 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 TOM1L1O75674 476 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 ITGB3P05106 788 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 HSPA6P17066 643 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 GARSP41250 739 aaKnown RBP10.82□□□□□ -0.68
USP54-201ENST00000339859 RBM10P98175 930 aaKnown RBP10.82□□□□□ -0.68
USP54-201ENST00000339859 ZNF280DQ6N043 979 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 SH3BP5LQ7L8J4 393 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 RBM41Q96IZ5 413 aaKnown RBP10.82□□□□□ -0.68
USP54-201ENST00000339859 SULT1E1P49888 294 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 NME3Q13232 169 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 PKN2Q16513 984 aaKnown RBP10.82□□□□□ -0.68
USP54-201ENST00000339859 GEN1Q17RS7 908 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 PBKQ96KB5 322 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 NIF3L1Q9GZT8 377 aa10.82□□□□□ -0.68
USP54-201ENST00000339859 HLA-DRAP01903 254 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 ALKBH5Q6P6C2 394 aaKnown RBP10.81□□□□□ -0.68
USP54-201ENST00000339859 ITIH5Q86UX2 942 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 PARVAQ9NVD7 372 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 APEX2Q9UBZ4 518 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 SPEF2Q9C093 1822 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 H3BRJ5 948 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 INHAP05111 366 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 HSD17B4P51659 736 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 GLYCTKQ8IVS8 523 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 KCNK9Q9NPC2 374 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 PLCB1Q9NQ66 1216 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 WDR35Q9P2L0 1181 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 EPHB3P54753 998 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 DUSP28Q4G0W2 176 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 SH3D19Q5HYK7 790 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 FAM102AQ5T9C2 384 aaPredicted RBP10.81□□□□□ -0.68
USP54-201ENST00000339859 CDKL2Q92772 493 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 ATP2A3Q93084 1043 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 SLITRK1Q96PX8 696 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 GPRC5CQ9NQ84 441 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 DYRK4Q9NR20 520 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 DDX56Q9NY93 547 aaKnown RBP10.81□□□□□ -0.68
USP54-201ENST00000339859 NKIRAS1Q9NYS0 192 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 FOXN1O15353 648 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 PDGFRBP09619 1106 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 ATICP31939 592 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 LHX1P48742 406 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 RPL10AP62906 217 aaKnown RBP10.81□□□□□ -0.68
USP54-201ENST00000339859 CTXN3Q4LDR2 81 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 SDE2Q6IQ49 451 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 UROC1Q96N76 676 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 MFAP3LO75121 409 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 ST8SIA6P61647 398 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 RAD51Q06609 339 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 EHHADHQ08426 723 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 GIT2Q14161 759 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 E2F5Q15329 346 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 MTHFD1LQ6UB35 978 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 C11orf70Q9BRQ4 267 aa10.81□□□□□ -0.68
USP54-201ENST00000339859 A0A1W2PQC6 194 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 TLDC2A0PJX2 215 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 MOXD2PA6NHM9 499 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 LRRC53A6NM62 1247 aa10.8□□□□□ -0.68
USP54-201ENST00000339859 BNIP3LO60238 219 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms