RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 LARGE1O95461 756 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 FOSP01100 380 aaPredicted RBP4.39□□□□□ -1.71
NEDD4-201ENST00000338963 AFPP02771 609 aaKnown RBP4.39□□□□□ -1.71
NEDD4-201ENST00000338963 PRKACAP17612 351 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 ATF6P18850 670 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 UBA7P41226 1012 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 ETV1P50549 477 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 GRM2Q14416 872 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 FAM209AQ5JX71 171 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 CDKAL1Q5VV42 579 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 LINC00299Q6ZSB3 139 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 PSD2Q9BQI7 771 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 GON7Q9BXV9 100 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 IGSF9Q9P2J2 1179 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 CEP170Q5SW79 1584 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 GYG2O15488 501 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 ALX3O95076 343 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 CBX5P45973 191 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 RPS6KA1Q15418 735 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 ALFQ53S48 1182 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 ARHGEF16Q5VV41 709 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 RESP18Q5W5W9 173 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 OTUD7BQ6GQQ9 843 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 SPOPLQ6IQ16 392 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 XKRXQ6PP77 449 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 C11orf96Q7Z7L8 435 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 PALM2Q8IXS6 379 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 CASKIN2Q8WXE0 1202 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 SEPT1Q8WYJ6 367 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 GLMNQ92990 594 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 ATP2A3Q93084 1043 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 NSL1Q96IY1 281 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 TTC25Q96NG3 672 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 C1orf50Q9BV19 199 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 KLHL25Q9H0H3 589 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 TMEM168Q9H0V1 697 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 EHD1Q9H4M9 534 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 IFT22Q9H7X7 185 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 DNAJC17Q9NVM6 304 aaKnown RBP4.39□□□□□ -1.71
NEDD4-201ENST00000338963 MOCS1Q9NZB8 636 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 SMG5Q9UPR3 1016 aaKnown RBP4.39□□□□□ -1.71
NEDD4-201ENST00000338963 CFL2Q9Y281 166 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 STON1Q9Y6Q2 735 aa4.39□□□□□ -1.71
NEDD4-201ENST00000338963 GOLGA8JA6NMD2 632 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 C16orf96A6NNT2 1141 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 MIF4GDA9UHW6 222 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 AQP9O43315 295 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 TOM1L1O75674 476 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CD53P19397 219 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 IL10P22301 178 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 SERPINB1P30740 379 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 FOSBP53539 338 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 EFTUD2Q15029 972 aaKnown RBP eCLIP4.38□□□□□ -1.712e-7■■■■□ 21.3
NEDD4-201ENST00000338963 PDK3Q15120 406 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 NECTIN1Q15223 517 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PHKG1Q16816 387 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 TDRD12Q587J7 1177 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 RNASEH2BQ5TBB1 312 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 FOXB2Q5VYV0 432 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 BTBD8Q5XKL5 378 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 MFSD5Q6N075 450 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 C4orf22Q6V702 233 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 BTN2A1Q7KYR7 527 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CCDC84Q86UT8 332 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CCDC25Q86WR0 208 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 GALNT11Q8NCW6 608 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CHPT1Q8WUD6 406 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ERP27Q96DN0 273 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PRICKLE1Q96MT3 831 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ZBED2Q9BTP6 218 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PHF20Q9BVI0 1012 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PACSIN2Q9UNF0 486 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PCDHGB3Q9Y5G1 929 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ARHGEF35A5YM69 484 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CFAP99D6REC4 459 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 TLR3O15455 904 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PJA2O43164 708 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 DDHD2O94830 711 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ZCCHC18P0CG32 403 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 STAT1P42224 750 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 MEA1Q16626 185 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 POTEHQ6S545 545 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 LRRC6Q86X45 466 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 S100ZQ8WXG8 99 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 ZNF75CPQ92670 426 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 METTL22Q9BUU2 404 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 C6orf62Q9GZU0 229 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 STK32BQ9NY57 414 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 TLR7Q9NYK1 1049 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 HPSEQ9Y251 543 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 MTO1Q9Y2Z2 717 aaKnown RBP4.38□□□□□ -1.71
NEDD4-201ENST00000338963 PCDHA5Q9Y5H7 936 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 HEY1Q9Y5J3 304 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 WDR19Q8NEZ3 1342 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 GOLGA8IPA6NC78 632 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 CPA1P15085 419 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 KYNUQ16719 465 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 TMEM266Q2M3C6 531 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 TRAPPC3LQ5T215 181 aa4.38□□□□□ -1.71
NEDD4-201ENST00000338963 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms