RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 SEPT14Q6ZU15 432 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 FBF1Q8TES7 1133 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 ZNF526Q8TF50 670 aaPredicted RBP11.23□□□□□ -0.61
COL3A1-202ENST00000317840 CCT6BQ92526 530 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 TGS1Q96RS0 853 aaKnown RBP11.23□□□□□ -0.61
COL3A1-202ENST00000317840 IWS1Q96ST2 819 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 PLCD4Q9BRC7 762 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 VPS37BQ9H9H4 285 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 C1orf112Q9NSG2 853 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 ZDHHC18Q9NUE0 388 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 TTC7AQ9ULT0 858 aaPredicted RBP11.23□□□□□ -0.61
COL3A1-202ENST00000317840 GINS2Q9Y248 185 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 L3MBTL1Q9Y468 752 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 USP15Q9Y4E8 981 aaPredicted RBP11.23□□□□□ -0.61
COL3A1-202ENST00000317840 CSADQ9Y600 493 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 SCN7AQ01118 1682 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 FRMPD4Q14CM0 1322 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 P4HBP07237 508 aaKnown RBP11.23□□□□□ -0.61
COL3A1-202ENST00000317840 SCP2P22307 547 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 DMP1Q13316 513 aaPredicted RBP11.23□□□□□ -0.61
COL3A1-202ENST00000317840 SNRNP35Q16560 246 aaKnown RBP11.23□□□□□ -0.61
COL3A1-202ENST00000317840 KRT39Q6A163 491 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 EPS8L1Q8TE68 723 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 CPA5Q8WXQ8 436 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 DCPSQ96C86 337 aaKnown RBP11.23□□□□□ -0.61
COL3A1-202ENST00000317840 TLCD1Q96CP7 247 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 RNF181Q9P0P0 153 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 ZNF148Q9UQR1 794 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 MYH1P12882 1939 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 MYH4Q9Y623 1939 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 KIAA1551Q9HCM1 1747 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 RASA4BC9J798 803 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 ANKRD63C9JTQ0 380 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 RASA4O43374 803 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 GGPS1O95749 300 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 MMP13P45452 471 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 QARSP47897 775 aaKnown RBP11.22□□□□□ -0.61
COL3A1-202ENST00000317840 AUHQ13825 339 aaKnown RBP11.22□□□□□ -0.61
COL3A1-202ENST00000317840 KIF22Q14807 665 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 C11orf63Q6NUN7 778 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 ZDHHC24Q6UX98 284 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 GRK7Q8WTQ7 553 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 VTI1AQ96AJ9 217 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 FAM84AQ96KN4 292 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 RPS6KC1Q96S38 1066 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 RMDN3Q96TC7 470 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 RPAP3Q9H6T3 665 aaPredicted RBP11.22□□□□□ -0.61
COL3A1-202ENST00000317840 KCNH7Q9NS40 1196 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 TOPORSQ9NS56 1045 aaPredicted RBP11.22□□□□□ -0.61
COL3A1-202ENST00000317840 GGA3Q9NZ52 723 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 WRAP73Q9P2S5 460 aaPredicted RBP11.22□□□□□ -0.61
COL3A1-202ENST00000317840 ASTN2O75129 1339 aaPredicted RBP11.22□□□□□ -0.61
COL3A1-202ENST00000317840 ITGA8P53708 1063 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 UBAP2Q5T6F2 1119 aaKnown RBP11.22□□□□□ -0.61
COL3A1-202ENST00000317840 PLA2G4FQ68DD2 849 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 DLK2Q6UY11 383 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 ARHGEF18Q6ZSZ5 1173 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 PWWP2AQ96N64 755 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 PCDHB18PQ96TA0 734 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 PITPNM3Q9BZ71 974 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 TMEM117Q9H0C3 514 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 KMT5AQ9NQR1 393 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 SRCAPQ6ZRS2 3230 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 RPTORQ8N122 1335 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 DENND3A2RUS2 1198 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 CYP11B1P15538 503 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 CREB1P16220 341 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 ZSWIM2Q8NEG5 633 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 CAMKK2Q96RR4 588 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 C11orf70Q9BRQ4 267 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 KLHL11Q9NVR0 708 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.22□□□□□ -0.61
COL3A1-202ENST00000317840 GRHL1Q9NZI5 618 aa11.22□□□□□ -0.61
COL3A1-202ENST00000317840 IGLV3-22A0A075B6J6 115 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 EIF4E1BA6NMX2 242 aaKnown RBP11.21□□□□□ -0.61
COL3A1-202ENST00000317840 SPAG7O75391 227 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 PAEPP09466 180 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 ELF3P78545 371 aaPredicted RBP11.21□□□□□ -0.61
COL3A1-202ENST00000317840 POU5F1Q01860 360 aaKnown RBP11.21□□□□□ -0.61
COL3A1-202ENST00000317840 MTMR1Q13613 665 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 LIN9Q5TKA1 542 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 DAB2IPQ5VWQ8 1189 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 SNRNP48Q6IEG0 339 aaKnown RBP11.21□□□□□ -0.61
COL3A1-202ENST00000317840 TRMT10CQ7L0Y3 403 aaKnown RBP11.21□□□□□ -0.61
COL3A1-202ENST00000317840 SPATA21Q7Z572 469 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 SIAH1Q8IUQ4 282 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 GMCL1P1Q8NEA9 526 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 FBXL13Q8NEE6 735 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 MICAL1Q8TDZ2 1067 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 MAIP1Q8WWC4 291 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 SNF8Q96H20 258 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 CHST7Q9NS84 486 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 GTF3C4Q9UKN8 822 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.21□□□□□ -0.61
COL3A1-202ENST00000317840 ZMYM2Q9UBW7 1377 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 EXOC1LA0A1B0GW35 172 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 IGF2BP3O00425 579 aaKnown RBP eCLIP11.21□□□□□ -0.61
COL3A1-202ENST00000317840 ASAP2O43150 1006 aa11.21□□□□□ -0.61
COL3A1-202ENST00000317840 YWHABP31946 246 aaKnown RBP11.21□□□□□ -0.61
COL3A1-202ENST00000317840 DRG2P55039 364 aaKnown RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms