RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 CNNM1Q9NRU3 951 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 DDX43Q9NXZ2 648 aaKnown RBP7.08□□□□□ -1.28
ZNF540-201ENST00000316433 CLIC5Q9NZA1 410 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 RPL26L1Q9UNX3 145 aaKnown RBP7.08□□□□□ -1.28
ZNF540-201ENST00000316433 SPDYE16A6NNV3 312 aaPredicted RBP7.08□□□□□ -1.28
ZNF540-201ENST00000316433 RASA4BC9J798 803 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 CCDC188H7C350 402 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 RASA4O43374 803 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 STRNO43815 780 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 ENTPD5O75356 428 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 ZBED1O96006 694 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 APOEP02649 317 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 CLK2P49760 499 aaKnown RBP7.08□□□□□ -1.28
ZNF540-201ENST00000316433 IGBP1P78318 339 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 NR5A1Q13285 461 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 MTMR3Q13615 1198 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 TNFAIP8L3Q5GJ75 292 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 SYCP2LQ5T4T6 812 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 HGSNATQ68CP4 663 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 NFRKBQ6P4R8 1299 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 PDXDC1Q6P996 788 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 LRRC74BQ6ZQY2 392 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 SRBD1Q8N5C6 995 aaKnown RBP7.08□□□□□ -1.28
ZNF540-201ENST00000316433 SPERTQ8NA61 448 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 NRG4Q8WWG1 115 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 INPP4AQ96PE3 977 aaPredicted RBP7.08□□□□□ -1.28
ZNF540-201ENST00000316433 ZNF184Q99676 751 aaPredicted RBP7.08□□□□□ -1.28
ZNF540-201ENST00000316433 SELENOSQ9BQE4 189 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 STK33Q9BYT3 514 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 MTFR1LQ9H019 292 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 RIOX1Q9H6W3 641 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 NHEJ1Q9H9Q4 299 aaPredicted RBP7.08□□□□□ -1.28
ZNF540-201ENST00000316433 ZNF652Q9Y2D9 606 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 ARL2BPQ9Y2Y0 163 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 KDM3AQ9Y4C1 1321 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 RCCD1A6NED2 376 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 TTLL13PA6NNM8 815 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 FAM47E-STBD1D6RA91 191 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 SLC16A3O15427 465 aaKnown RBP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 MAP3K7O43318 606 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 ZBED4O75132 1171 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 SUZ12Q15022 739 aaKnown RBP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 NAB2Q15742 525 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 ZNF827Q17R98 1081 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 CTC1Q2NKJ3 1217 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 WDR72Q3MJ13 1102 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 EARS2Q5JPH6 523 aaKnown RBP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 HS2ST1Q7LGA3 356 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 DGCR14Q96DF8 476 aaKnown RBP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 VPS50Q96JG6 964 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 CCDC85AQ96PX6 553 aaPredicted RBP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 TMEM237Q96Q45 408 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 PRPF18Q99633 342 aaKnown RBP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 PRMT1Q99873 361 aaKnown RBP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 CRNKL1Q9BZJ0 848 aaKnown RBP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 SLITRK6Q9H5Y7 841 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 ZNF287Q9HBT7 754 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 INTS9Q9NV88 658 aaKnown RBP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 MAD2L2Q9UI95 211 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 PCDHA6Q9UN73 950 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 PPME1Q9Y570 386 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 PCDHA8Q9Y5H6 950 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 SLC30A1Q9Y6M5 507 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 GAKO14976 1311 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 ATP5HO75947 161 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 CXCR5P32302 372 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 GTF2H1P32780 548 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 SLC16A2P36021 539 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 IGHMBP2P38935 993 aaKnown RBP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 MMP13P45452 471 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 ZNF132P52740 706 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 GSTO1P78417 241 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 AP1B1Q10567 949 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 HLTFQ14527 1009 aaKnown RBP eCLIP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 CYTH1Q15438 398 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 ECM1Q16610 540 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 ANKDD1AQ495B1 522 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 WDR45BQ5MNZ6 344 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 MEI1Q5TIA1 1274 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 C12orf60Q5U649 245 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 PPP2R2DQ66LE6 453 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 FAM117BQ6P1L5 589 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 NLRP9Q7RTR0 991 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 MCF2L2Q86YR7 1114 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 IFNLR1Q8IU57 520 aaPredicted RBP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 DNAJC10Q8IXB1 793 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 FAM20CQ8IXL6 584 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 GOLM1Q8NBJ4 401 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 SCFD2Q8WU76 684 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 UBLCP1Q8WVY7 318 aaPredicted RBP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 ANKRD36BP1Q96IX9 119 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 EPSTI1Q96J88 318 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 ZBTB3Q9H5J0 574 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 DENND2DQ9H6A0 471 aaPredicted RBP7.07□□□□□ -1.28
ZNF540-201ENST00000316433 GJB4Q9NTQ9 266 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 MRGBPQ9NV56 204 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 SELENONQ9NZV5 590 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 NUMBLQ9Y6R0 609 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 LOC105371267A0A1B0GV96 52 aa7.07□□□□□ -1.28
ZNF540-201ENST00000316433 TBX3O15119 743 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms