RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 GATA6Q92908 595 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 GJD4Q96KN9 370 aaPredicted RBP14.37□□□□□ -0.11
SKA3-201ENST00000298260 ANKRD27Q96NW4 1050 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 CYTH2Q99418 400 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 GALNT8Q9NY28 637 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 PARP2Q9UGN5 583 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 A0A0G2JND7 137 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 GSTTP1A0A1W2PQM5 241 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 FAM47DPA6NHR8 397 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 A6NJR5 290 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 SPOPO43791 374 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 USP1O94782 785 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 CALCAP01258 141 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 LMNB1P20700 586 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 MYBPC3Q14896 1274 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 LRRC36Q1X8D7 754 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 WASHC2DQ5SRD0 308 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 OTOAQ7RTW8 1153 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 LRRC47Q8N1G4 583 aaKnown RBP14.37□□□□□ -0.11
SKA3-201ENST00000298260 UBL4BQ8N7F7 174 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 DOT1LQ8TEK3 1739 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 ARAP2Q8WZ64 1704 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 A0A1W2PPM1 405 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 ABLIM1O14639 778 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 ASMTLO95671 621 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 PTPN4P29074 926 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 CRKLP46109 303 aaKnown RBP14.37□□□□□ -0.11
SKA3-201ENST00000298260 ADCY7P51828 1080 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 DEUP1Q05D60 604 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 PKN2Q16513 984 aaKnown RBP14.37□□□□□ -0.11
SKA3-201ENST00000298260 EDRF1Q3B7T1 1238 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 TTC7BQ86TV6 843 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 SEPT12Q8IYM1 358 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 INPP5DQ92835 1189 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 DNAJC1Q96KC8 554 aaKnown RBP14.37□□□□□ -0.11
SKA3-201ENST00000298260 HEMGNQ9BXL5 484 aa14.37□□□□□ -0.11
SKA3-201ENST00000298260 DNAAF2Q9NVR5 837 aaKnown RBP14.37□□□□□ -0.11
SKA3-201ENST00000298260 ZBED4O75132 1171 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 SLC16A2P36021 539 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 ADCY8P40145 1251 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 PIK3CAP42336 1068 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 RASSF2P50749 326 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 CYP2J2P51589 502 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 THOC5Q13769 683 aaKnown RBP14.36□□□□□ -0.11
SKA3-201ENST00000298260 CLNKQ7Z7G1 428 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 CROCCP2Q86T23 111 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 AMIGO3Q86WK7 504 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 FBXO27Q8NI29 283 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 C7orf43Q8WVR3 580 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 KAT5Q92993 513 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 CEP95Q96GE4 821 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 R3HDM2Q9Y2K5 976 aaKnown RBP14.36□□□□□ -0.11
SKA3-201ENST00000298260 NRAPQ86VF7 1730 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 ANKRD62A6NC57 917 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 USP17L15C9J2P7 530 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 USP17L13C9JLJ4 530 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 USP17L11C9JVI0 530 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 USP17L18D6R9N7 530 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 USP17L22D6RA61 530 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 USP17L17D6RBQ6 530 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 USP17L19D6RCP7 530 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 USP17L20D6RJB6 530 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 HNRNPRO43390 633 aaKnown RBP14.36□□□□□ -0.11
SKA3-201ENST00000298260 CREB3O43889 395 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 LYNP07948 512 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 RRM1P23921 792 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 USP17L24Q0WX57 530 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 MKRN3Q13064 507 aaKnown RBP14.36□□□□□ -0.11
SKA3-201ENST00000298260 PPP2R5EQ16537 467 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 SGO2Q562F6 1265 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 MDH1BQ5I0G3 518 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 PHLDB3Q6NSJ2 640 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 USP17L6PQ6QN14 398 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 HS2ST1Q7LGA3 356 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 SHKBP1Q8TBC3 707 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 CELF1Q92879 486 aaKnown RBP14.36□□□□□ -0.11
SKA3-201ENST00000298260 KLF6Q99612 283 aaPredicted RBP14.36□□□□□ -0.11
SKA3-201ENST00000298260 SYT11Q9BT88 431 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 SPZ1Q9BXG8 430 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 KANSL3Q9P2N6 904 aa14.36□□□□□ -0.11
SKA3-201ENST00000298260 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.36□□□□□ -0.11
SKA3-201ENST00000298260 NUP98P52948 1817 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 EDF1O60869 148 aaKnown RBP14.35□□□□□ -0.11
SKA3-201ENST00000298260 PSMG1O95456 288 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 IVDP26440 423 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 NMT1P30419 496 aaKnown RBP14.35□□□□□ -0.11
SKA3-201ENST00000298260 MAGEA10P43363 369 aaPredicted RBP14.35□□□□□ -0.11
SKA3-201ENST00000298260 USP46P62068 366 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 MTMR2Q13614 643 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 C2CD6Q53TS8 623 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 RINLQ6ZS11 566 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 DZIP1Q86YF9 867 aaKnown RBP14.35□□□□□ -0.11
SKA3-201ENST00000298260 SLC25A41Q8N5S1 370 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 PTPRN2Q92932 1015 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 OPTNQ96CV9 577 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 BICD1Q96G01 975 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 CLPTM1LQ96KA5 538 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 TMX4Q9H1E5 349 aaPredicted RBP14.35□□□□□ -0.11
SKA3-201ENST00000298260 ARMCX1Q9P291 453 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 STARD13Q9Y3M8 1113 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms