RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 GJC2Q5T442 439 aaPredicted RBP16.49■□□□□ 0.23
SF3B4-201ENST00000271628 MEI1Q5TIA1 1274 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 CREG2Q8IUH2 290 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 SYCE1Q8N0S2 351 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 OLIG1Q8TAK6 271 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 CTNNBL1Q8WYA6 563 aaPredicted RBP16.49■□□□□ 0.23
SF3B4-201ENST00000271628 CAPZA3Q96KX2 299 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 MMS19Q96T76 1030 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 CGRRF1Q99675 332 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 FZD8Q9H461 694 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 PDE11AQ9HCR9 933 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 C1orf112Q9NSG2 853 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 SEPT11Q9NVA2 429 aaKnown RBP16.49■□□□□ 0.23
SF3B4-201ENST00000271628 ZNF236Q9UL36 1845 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 TARSL2A2RTX5 802 aaKnown RBP16.48■□□□□ 0.23
SF3B4-201ENST00000271628 ANKRD62A6NC57 917 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 H3BQF6 201 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 H3BRB1 525 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 C22orf31O95567 290 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 PAFAH1B1P43034 410 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 PTENP60484 403 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 ITIH3Q06033 890 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 MCL1Q07820 350 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 CASP8Q14790 479 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 MAP9Q49MG5 647 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 TRAPPC12Q8WVT3 735 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 KAT5Q92993 513 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 TUT1Q9H6E5 874 aaKnown RBP16.48■□□□□ 0.23
SF3B4-201ENST00000271628 NMRK2Q9NPI5 230 aa16.48■□□□□ 0.23
SF3B4-201ENST00000271628 OGTO15294 1046 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 GZMAP12544 262 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 INHBEP58166 350 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 BIRC3Q13489 604 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 TSHZ1Q6ZSZ6 1077 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 ZNF572Q7Z3I7 529 aaPredicted RBP16.47■□□□□ 0.23
SF3B4-201ENST00000271628 BRSK2Q8IWQ3 736 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 EPS8L1Q8TE68 723 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 NLRP4Q96MN2 994 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 C16orf70Q9BSU1 422 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 ISCUQ9H1K1 167 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 VIPAS39Q9H9C1 493 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 CNTNAP2Q9UHC6 1331 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.47■□□□□ 0.23
SF3B4-201ENST00000271628 GRID2IPA4D2P6 1211 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 INO80B-WBP1J3KQ70 363 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 ZNF185O15231 689 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 SMPD1P17405 629 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 CLCN3P51790 818 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 DGKDQ16760 1214 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 CCDC181Q5TID7 509 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 TDRD10Q5VZ19 366 aaKnown RBP16.47■□□□□ 0.23
SF3B4-201ENST00000271628 RASAL3Q86YV0 1011 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 RPUSD2Q8IZ73 545 aaKnown RBP16.47■□□□□ 0.23
SF3B4-201ENST00000271628 NPLOC4Q8TAT6 608 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 INO80BQ9C086 356 aaPredicted RBP16.47■□□□□ 0.23
SF3B4-201ENST00000271628 PRMT7Q9NVM4 692 aaPredicted RBP16.47■□□□□ 0.23
SF3B4-201ENST00000271628 CPA4Q9UI42 421 aa16.47■□□□□ 0.23
SF3B4-201ENST00000271628 CYP26A1O43174 497 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 SGPL1O95470 568 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 HLA-DRAP01903 254 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 HOXD8P13378 290 aaPredicted RBP16.46■□□□□ 0.23
SF3B4-201ENST00000271628 PIK3CAP42336 1068 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 PHKA2P46019 1235 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 PDE6CP51160 858 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 IGBP1P78318 339 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 TAF1CQ15572 869 aaPredicted RBP16.46■□□□□ 0.23
SF3B4-201ENST00000271628 NFRKBQ6P4R8 1299 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 MPZL3Q6UWV2 235 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 WDR49Q8IV35 697 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 OR6J1Q8NGC5 347 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 TPCN2Q8NHX9 752 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 RFFLQ8WZ73 363 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 TATDN2Q93075 761 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 MED4Q9NPJ6 270 aa16.46■□□□□ 0.23
SF3B4-201ENST00000271628 TMCO5BA8MYB1 307 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 CES2O00748 559 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 FAM189A1O60320 539 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 RTN2O75298 545 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 HARSP12081 509 aaKnown RBP16.46■□□□□ 0.22
SF3B4-201ENST00000271628 CYP11B1P15538 503 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 PROZP22891 400 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 MAP2K5Q13163 448 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 CFAP221Q4G0U5 840 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 HSP90B2PQ58FF3 399 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 MORN1Q5T089 497 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 ATF7IP2Q5U623 682 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 IFNLR1Q8IU57 520 aaPredicted RBP16.46■□□□□ 0.22
SF3B4-201ENST00000271628 RHOT2Q8IXI1 618 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 COG1Q8WTW3 980 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.46■□□□□ 0.224e-6■■■■■ 72.1
SF3B4-201ENST00000271628 NOCTQ9UK39 431 aaKnown RBP16.46■□□□□ 0.22
SF3B4-201ENST00000271628 NCANO14594 1321 aa16.46■□□□□ 0.22
SF3B4-201ENST00000271628 TTLL13PA6NNM8 815 aa16.45■□□□□ 0.22
SF3B4-201ENST00000271628 IGF2BP3O00425 579 aaKnown RBP eCLIP16.45■□□□□ 0.22
SF3B4-201ENST00000271628 NCK2O43639 380 aa16.45■□□□□ 0.22
SF3B4-201ENST00000271628 FTCDO95954 541 aa16.45■□□□□ 0.22
SF3B4-201ENST00000271628 MMP3P08254 477 aa16.45■□□□□ 0.22
SF3B4-201ENST00000271628 HNRNPH2P55795 449 aaKnown RBP16.45■□□□□ 0.22
SF3B4-201ENST00000271628 WNT7BP56706 349 aa16.45■□□□□ 0.22
SF3B4-201ENST00000271628 BPIFB4P59827 614 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms