RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 LIMD1Q9UGP4 676 aa10.72□□□□□ -0.69
VPS41-201ENST00000265745 ADAM28Q9UKQ2 775 aa10.72□□□□□ -0.69
VPS41-201ENST00000265745 KIF3AQ9Y496 699 aa10.72□□□□□ -0.69
VPS41-201ENST00000265745 KIAA1671Q9BY89 1806 aa10.72□□□□□ -0.69
VPS41-201ENST00000265745 ATG2AQ2TAZ0 1938 aa10.72□□□□□ -0.69
VPS41-201ENST00000265745 TECTAO75443 2155 aa10.72□□□□□ -0.69
VPS41-201ENST00000265745 E9PMD0 336 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 K7ERI5 159 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 RECQL4O94761 1208 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 GLUD1P00367 558 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 THP07101 528 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 NPTX2P47972 431 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 HSP90AA2PQ14568 343 aaPredicted RBP10.71□□□□□ -0.69
VPS41-201ENST00000265745 NAB2Q15742 525 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 ATF7IP2Q5U623 682 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 MCTP1Q6DN14 999 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 LILRA6Q6PI73 481 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 C1orf186Q6ZWK4 172 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 KCNK18Q7Z418 384 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 ZBTB33Q86T24 672 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 METTL3Q86U44 580 aaKnown RBP10.71□□□□□ -0.69
VPS41-201ENST00000265745 DAW1Q8N136 415 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 FBXL6Q8N531 539 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 TDRD5Q8NAT2 981 aaKnown RBP10.71□□□□□ -0.69
VPS41-201ENST00000265745 CMASQ8NFW8 434 aaPredicted RBP10.71□□□□□ -0.69
VPS41-201ENST00000265745 ADPGKQ9BRR6 497 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 RHOBTB2Q9BYZ6 727 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 MAN1C1Q9NR34 630 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 FNIP2Q9P278 1114 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 DPP7Q9UHL4 492 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 SORCS3Q9UPU3 1222 aa10.71□□□□□ -0.69
VPS41-201ENST00000265745 TRIOO75962 3097 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 CCDC195A0A1B0GUA6 201 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 CASTOR2A6NHX0 329 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 CCDC169A6NNP5 214 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 TGM5O43548 720 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 HIP1RO75146 1068 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 PAPLNO95428 1278 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 BRD1O95696 1058 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 ASGR2P07307 311 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 GJB2P29033 226 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 ATP2C1P98194 919 aaPredicted RBP10.7□□□□□ -0.7
VPS41-201ENST00000265745 MTMR3Q13615 1198 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 MCM6Q14566 821 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 DCAF4L1Q3SXM0 396 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 RINT1Q6NUQ1 792 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 CYP26C1Q6V0L0 522 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 CCDC149Q6ZUS6 474 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 OTOP3Q7RTS5 596 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 PALB2Q86YC2 1186 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 SUGP1Q8IWZ8 645 aaKnown RBP10.7□□□□□ -0.7
VPS41-201ENST00000265745 UBALD2Q8IYN6 164 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 HDAC7Q8WUI4 952 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 RIN2Q8WYP3 895 aaPredicted RBP10.7□□□□□ -0.7
VPS41-201ENST00000265745 NTPCRQ9BSD7 190 aaKnown RBP10.7□□□□□ -0.7
VPS41-201ENST00000265745 RUSC1Q9BVN2 902 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 PLEKHA4Q9H4M7 779 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 TMEM134Q9H6X4 195 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 C17orf75Q9HAS0 396 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 UPF2Q9HAU5 1272 aaKnown RBP10.7□□□□□ -0.7
VPS41-201ENST00000265745 PTPRHQ9HD43 1115 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.7□□□□□ -0.7
VPS41-201ENST00000265745 ARHGAP28Q9P2N2 729 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 TNFSF13BQ9Y275 285 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 GDAQ9Y2T3 454 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 RBM19Q9Y4C8 960 aaKnown RBP10.7□□□□□ -0.7
VPS41-201ENST00000265745 WDR81Q562E7 1941 aa10.7□□□□□ -0.7
VPS41-201ENST00000265745 ZDBF2Q9HCK1 2354 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 SF3B1O75533 1304 aaKnown RBP eCLIP10.69□□□□□ -0.71e-8■■■■■ 51.8
VPS41-201ENST00000265745 H3BQV1 296 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 RFPL2O75678 378 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 KIF4AO95239 1232 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 SPATA31D3P0C874 917 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 MYBP10242 640 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 RPL17P18621 184 aaKnown RBP10.69□□□□□ -0.7
VPS41-201ENST00000265745 MCM2P49736 904 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 PEX3P56589 373 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 NHLH1Q02575 133 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 MAPK7Q13164 816 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 DMP1Q13316 513 aaPredicted RBP10.69□□□□□ -0.7
VPS41-201ENST00000265745 RTP2Q5QGT7 225 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 HYIQ5T013 277 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 FAM171A1Q5VUB5 890 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 ELMSAN1Q6PJG2 1045 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 ALKAL1Q6UXT8 129 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 SPATA31D4Q6ZUB0 917 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 TAS1R3Q7RTX0 852 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 KCTD17Q8N5Z5 321 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 ZNF707Q96C28 371 aaPredicted RBP10.69□□□□□ -0.7
VPS41-201ENST00000265745 ACSF2Q96CM8 615 aaPredicted RBP10.69□□□□□ -0.7
VPS41-201ENST00000265745 DRC1Q96MC2 740 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 PNMA5Q96PV4 448 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 ACO2Q99798 780 aaKnown RBP10.69□□□□□ -0.7
VPS41-201ENST00000265745 CLSTN3Q9BQT9 956 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 TTPALQ9BTX7 342 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 NT5C3AQ9H0P0 336 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 SMOC2Q9H3U7 446 aa10.69□□□□□ -0.7
VPS41-201ENST00000265745 WDR6Q9NNW5 1121 aaKnown RBP10.69□□□□□ -0.7
VPS41-201ENST00000265745 SMIM28A0A1B0GU29 152 aa10.68□□□□□ -0.7
VPS41-201ENST00000265745 SFI1A8K8P3 1242 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms