RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 AAASQ9NRG9 546 aa20.03■□□□□ 0.8
SMPD3-201ENST00000219334 TSR3Q9UJK0 312 aaKnown RBP20.03■□□□□ 0.8
SMPD3-201ENST00000219334 SETD1BQ9UPS6 1966 aaKnown RBP20.03■□□□□ 0.8
SMPD3-201ENST00000219334 E2F6O75461 281 aa20.03■□□□□ 0.8
SMPD3-201ENST00000219334 PDIA2Q13087 525 aaKnown RBP20.03■□□□□ 0.8
SMPD3-201ENST00000219334 ZC3H18Q86VM9 953 aaKnown RBP20.03■□□□□ 0.8
SMPD3-201ENST00000219334 PCDHB7Q9Y5E2 793 aa20.03■□□□□ 0.8
SMPD3-201ENST00000219334 A0A087WUV0 522 aaPredicted RBP20.02■□□□□ 0.8
SMPD3-201ENST00000219334 FAM95CA0A1B0GW59 222 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 SCP2P22307 547 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 RGS2P41220 211 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 MDM2Q00987 491 aaPredicted RBP20.02■□□□□ 0.8
SMPD3-201ENST00000219334 EZH2Q15910 746 aaKnown RBP20.02■□□□□ 0.8
SMPD3-201ENST00000219334 EFCAB12Q6NXP0 572 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 ZNF512BQ96KM6 892 aaPredicted RBP20.02■□□□□ 0.8
SMPD3-201ENST00000219334 CASS4Q9NQ75 786 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 SLC26A4O43511 780 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 PDGFRBP09619 1106 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 CASP8Q14790 479 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 ATG4CQ96DT6 458 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 TRIM33Q9UPN9 1127 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 NPHP3-ACAD11A0A0J9YXS1 232 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 ATP9BO43861 1147 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 GUCY1A2P33402 732 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 ACBD5Q5T8D3 534 aaPredicted RBP20.02■□□□□ 0.8
SMPD3-201ENST00000219334 ATF7IP2Q5U623 682 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 SDE2Q6IQ49 451 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 MXRA8Q9BRK3 442 aa20.02■□□□□ 0.8
SMPD3-201ENST00000219334 FAF1Q9UNN5 650 aaPredicted RBP20.02■□□□□ 0.8
SMPD3-201ENST00000219334 AP3B1O00203 1094 aa20.02■□□□□ 0.79
SMPD3-201ENST00000219334 TRPA1O75762 1119 aa20.02■□□□□ 0.79
SMPD3-201ENST00000219334 ARL4DP49703 201 aa20.02■□□□□ 0.79
SMPD3-201ENST00000219334 MRPS25P82663 173 aaKnown RBP20.02■□□□□ 0.79
SMPD3-201ENST00000219334 ITPK1Q13572 414 aa20.02■□□□□ 0.79
SMPD3-201ENST00000219334 MEI1Q5TIA1 1274 aa20.02■□□□□ 0.79
SMPD3-201ENST00000219334 ATP11CQ8NB49 1132 aa20.02■□□□□ 0.79
SMPD3-201ENST00000219334 CXorf38Q8TB03 319 aa20.02■□□□□ 0.79
SMPD3-201ENST00000219334 RIT2Q99578 217 aa20.02■□□□□ 0.79
SMPD3-201ENST00000219334 DCTN3O75935 186 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 PDHBP11177 359 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 PYGBP11216 843 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 PDGFRAP16234 1089 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 EPM2AIP1Q7L775 607 aaPredicted RBP20.01■□□□□ 0.79
SMPD3-201ENST00000219334 FBXO33Q7Z6M2 555 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.01■□□□□ 0.79
SMPD3-201ENST00000219334 DNAJC5Q9H3Z4 198 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 PCDHGB4Q9UN71 923 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 C3orf70A6NLC5 250 aaPredicted RBP20.01■□□□□ 0.79
SMPD3-201ENST00000219334 RTN2O75298 545 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 RASA1P20936 1047 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 SLC1A1P43005 524 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 RGS7P49802 495 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 ANO4Q32M45 955 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 TSGA10IPQ3SY00 556 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 RNF135Q8IUD6 432 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 BTBD6Q96KE9 485 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 TSSK1BQ9BXA7 367 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 ABCB6Q9NP58 842 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 CFAP69A5D8W1 941 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 TRIM9Q9C026 710 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 PDS5AQ29RF7 1337 aaKnown RBP20.01■□□□□ 0.79
SMPD3-201ENST00000219334 TYK2P29597 1187 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 TBC1D1Q86TI0 1168 aaPredicted RBP20.01■□□□□ 0.79
SMPD3-201ENST00000219334 ANGPTL2Q9UKU9 493 aa20.01■□□□□ 0.79
SMPD3-201ENST00000219334 SCAF8Q9UPN6 1271 aaKnown RBP20.01■□□□□ 0.79
SMPD3-201ENST00000219334 USP42Q9H9J4 1324 aaKnown RBP20■□□□□ 0.79
SMPD3-201ENST00000219334 TTC26A0AVF1 554 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 PIK3R2O00459 728 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 PRPF4O43172 522 aaKnown RBP eCLIP20■□□□□ 0.79
SMPD3-201ENST00000219334 STAG3L1P0CL83 205 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 ALDH1A3P47895 512 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 FASTKD1Q53R41 847 aaKnown RBP20■□□□□ 0.79
SMPD3-201ENST00000219334 ZBED8Q8IZ13 594 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 PPHLN1Q8NEY8 458 aaKnown RBP20■□□□□ 0.79
SMPD3-201ENST00000219334 A0A1W2PQC6 194 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 HDLBPQ00341 1268 aaKnown RBP20■□□□□ 0.79
SMPD3-201ENST00000219334 ANKS3Q6ZW76 656 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 SYNDIG1LA6NDD5 238 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 EIF3EP60228 445 aaKnown RBP20■□□□□ 0.79
SMPD3-201ENST00000219334 SNRNP35Q16560 246 aaKnown RBP20■□□□□ 0.79
SMPD3-201ENST00000219334 SYTL3Q4VX76 610 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 MUC3BQ9H195 1237 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 UBE2Q2LH0YL09 131 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 ATP6V1E1P36543 226 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 IL31Q6EBC2 164 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 NOTUMQ6P988 496 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 PDXDC1Q6P996 788 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 SHC4Q6S5L8 630 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 REEP2Q9BRK0 252 aa20■□□□□ 0.79
SMPD3-201ENST00000219334 EIF2AK3Q9NZJ5 1116 aaKnown RBP20■□□□□ 0.79
SMPD3-201ENST00000219334 HIST1H2AGP0C0S8 130 aaPredicted RBP19.99■□□□□ 0.79
SMPD3-201ENST00000219334 HIST1H2ADP20671 130 aa19.99■□□□□ 0.79
SMPD3-201ENST00000219334 MAP4P27816 1152 aaKnown RBP19.99■□□□□ 0.79
SMPD3-201ENST00000219334 MFN1Q8IWA4 741 aa19.99■□□□□ 0.79
SMPD3-201ENST00000219334 SNF8Q96H20 258 aa19.99■□□□□ 0.79
SMPD3-201ENST00000219334 HIST1H2AHQ96KK5 128 aa19.99■□□□□ 0.79
SMPD3-201ENST00000219334 FOPNLQ96NB1 174 aa19.99■□□□□ 0.79
SMPD3-201ENST00000219334 HIST1H2AJQ99878 128 aa19.99■□□□□ 0.79
SMPD3-201ENST00000219334 H2AFJQ9BTM1 129 aa19.99■□□□□ 0.79
SMPD3-201ENST00000219334 PHF20Q9BVI0 1012 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms