RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 TJP2Q9UDY2 1190 aa11.46□□□□□ -0.58
USP28-201ENST00000003302 TOM1O60784 492 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 FOSP01100 380 aaPredicted RBP11.45□□□□□ -0.58
USP28-201ENST00000003302 SCP2P22307 547 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 CNGA1P29973 690 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 FOXN2P32314 431 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 RPL7AP62424 266 aaKnown RBP11.45□□□□□ -0.58
USP28-201ENST00000003302 GKAP1Q5VSY0 366 aaPredicted RBP11.45□□□□□ -0.58
USP28-201ENST00000003302 RUFY4Q6ZNE9 571 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 PIGWQ7Z7B1 504 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 PNMA8AQ86V59 439 aaPredicted RBP11.45□□□□□ -0.58
USP28-201ENST00000003302 LRRN4Q8WUT4 740 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 INTS9Q9NV88 658 aaKnown RBP11.45□□□□□ -0.58
USP28-201ENST00000003302 SUGT1Q9Y2Z0 365 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 UNC80Q8N2C7 3258 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 KIAA1217Q5T5P2 1943 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 ACOT2P49753 483 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 RNF207Q6ZRF8 634 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 MIER3Q7Z3K6 550 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 PARD3BQ8TEW8 1205 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 R3HDMLQ9H3Y0 253 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 BAIAP2L1Q9UHR4 511 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 INTUQ9ULD6 942 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 GAP43P17677 238 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 NPTX2P47972 431 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 ITGA8P53708 1063 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 RPS6P62753 249 aaKnown RBP11.45□□□□□ -0.58
USP28-201ENST00000003302 IFI16Q16666 785 aaKnown RBP11.45□□□□□ -0.58
USP28-201ENST00000003302 TKFCQ3LXA3 575 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 TNFAIP8L3Q5GJ75 292 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 SHC3Q92529 594 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 ART4Q93070 314 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 CCPG1Q9ULG6 757 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 SPAG7O75391 227 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 KRT5P13647 590 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 SWT1Q5T5J6 900 aaKnown RBP11.45□□□□□ -0.58
USP28-201ENST00000003302 PARP9Q8IXQ6 854 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 TMEM161BQ8NDZ6 487 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 ZNF341Q9BYN7 854 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 PCYOX1Q9UHG3 505 aa11.45□□□□□ -0.58
USP28-201ENST00000003302 ZNF541Q9H0D2 1346 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 MEX3CQ5U5Q3 659 aaKnown RBP11.44□□□□□ -0.58
USP28-201ENST00000003302 CYP4F22Q6NT55 531 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 RHBDF2Q6PJF5 856 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 XXYLT1Q8NBI6 393 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 LMBR1Q8WVP7 490 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 FER1L6Q2WGJ9 1857 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 CDH23Q9H251 3354 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 CCT8L1PA6NM43 557 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 RGS20O76081 388 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 KRT16P08779 473 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 FDX1P10109 184 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 RALAP11233 206 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 CDR1P51861 262 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 C7orf43Q8WVR3 580 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 ARHGEF2Q92974 986 aaKnown RBP11.44□□□□□ -0.58
USP28-201ENST00000003302 CEP89Q96ST8 783 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 FAM213AQ9BRX8 229 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 MKNK1Q9BUB5 465 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 ATRNL1Q5VV63 1379 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 TESPA1A2RU30 521 aaPredicted RBP11.44□□□□□ -0.58
USP28-201ENST00000003302 SPDYE2BA6NHP3 402 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 RASGRF2O14827 1237 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 SPDYE6P0CI01 402 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 CAP2P40123 477 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 SRRM1Q8IYB3 904 aaKnown RBP11.44□□□□□ -0.58
USP28-201ENST00000003302 TEKT3Q9BXF9 490 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 APOBEC3GQ9HC16 384 aaKnown RBP11.44□□□□□ -0.58
USP28-201ENST00000003302 USTQ9Y2C2 406 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 DENND3A2RUS2 1198 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 GCAP28676 217 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 HIRAP54198 1017 aaPredicted RBP11.44□□□□□ -0.58
USP28-201ENST00000003302 GSCP56915 257 aaPredicted RBP11.44□□□□□ -0.58
USP28-201ENST00000003302 ZNF394Q53GI3 561 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 NUGGCQ68CJ6 796 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 SGSM3Q96HU1 749 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 TMEM237Q96Q45 408 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 RAB17Q9H0T7 212 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 GTF3C4Q9UKN8 822 aa11.44□□□□□ -0.58
USP28-201ENST00000003302 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.44□□□□□ -0.58
USP28-201ENST00000003302 C10orf71Q711Q0 1435 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 MYPNQ86TC9 1320 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 EFTUD2Q15029 972 aaKnown RBP eCLIP11.43□□□□□ -0.582e-6■■■■■ 27.7
USP28-201ENST00000003302 KAZNQ674X7 775 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 QTRT2Q9H974 415 aaKnown RBP11.43□□□□□ -0.58
USP28-201ENST00000003302 AGO4Q9HCK5 861 aaKnown RBP11.43□□□□□ -0.58
USP28-201ENST00000003302 ASIC3Q9UHC3 531 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 SERPINA10Q9UK55 444 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 RTN2O75298 545 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 PPP2R5AQ15172 486 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 UTP4Q969X6 686 aaKnown RBP11.43□□□□□ -0.58
USP28-201ENST00000003302 PGM2Q96G03 612 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 NCAPGQ9BPX3 1015 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 C11orf70Q9BRQ4 267 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 KCNK9Q9NPC2 374 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 ZNF70Q9UC06 446 aaPredicted RBP11.43□□□□□ -0.58
USP28-201ENST00000003302 GOLGA8SH3BPF8 625 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 GOLGA8MH3BSY2 632 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 SNX3O60493 162 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 HSPA1LP34931 641 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms