RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 VPS13AQ96RL7 3174 aa15.36■□□□□ 0.05
LINC00339-211ENST00000641009 CASTOR2A6NHX0 329 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 E9PMD0 336 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 ST18O60284 1047 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 RECQL4O94761 1208 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 BRD1O95696 1058 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 ASGR2P07307 311 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 IER5LQ5T953 404 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 EEF1DP3Q658K8 133 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 MCTP1Q6DN14 999 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 SUGP1Q8IWZ8 645 aaKnown RBP15.35■□□□□ 0.05
LINC00339-211ENST00000641009 HASPINQ8TF76 798 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 KIFAP3Q92845 792 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 TMX3Q96JJ7 454 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 ADPGKQ9BRR6 497 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 RAB34Q9BZG1 259 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 KCNH6Q9H252 994 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 RXFP1Q9HBX9 757 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 LIMD1Q9UGP4 676 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 SORCS3Q9UPU3 1222 aa15.35■□□□□ 0.05
LINC00339-211ENST00000641009 PTGESO14684 152 aa15.34■□□□□ 0.05
LINC00339-211ENST00000641009 TADA2AO75478 443 aa15.34■□□□□ 0.05
LINC00339-211ENST00000641009 GLUD1P00367 558 aa15.34■□□□□ 0.05
LINC00339-211ENST00000641009 SPATA31D3P0C874 917 aa15.34■□□□□ 0.05
LINC00339-211ENST00000641009 TUSC3Q13454 348 aa15.34■□□□□ 0.05
LINC00339-211ENST00000641009 MTMR3Q13615 1198 aa15.34■□□□□ 0.05
LINC00339-211ENST00000641009 HSP90AA2PQ14568 343 aaPredicted RBP15.34■□□□□ 0.05
LINC00339-211ENST00000641009 SPATA31D4Q6ZUB0 917 aa15.34■□□□□ 0.05
LINC00339-211ENST00000641009 GLYCTKQ8IVS8 523 aa15.34■□□□□ 0.05
LINC00339-211ENST00000641009 ZDHHC14Q8IZN3 488 aa15.34■□□□□ 0.05
LINC00339-211ENST00000641009 FBXL6Q8N531 539 aa15.34■□□□□ 0.05
LINC00339-211ENST00000641009 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.34■□□□□ 0.05
LINC00339-211ENST00000641009 USTQ9Y2C2 406 aa15.34■□□□□ 0.05
LINC00339-211ENST00000641009 GDAQ9Y2T3 454 aa15.34■□□□□ 0.05
LINC00339-211ENST00000641009 DMDP11532 3685 aa15.34■□□□□ 0.05
LINC00339-211ENST00000641009 CCDC195A0A1B0GUA6 201 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 LAD1O00515 517 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 RFPL2O75678 378 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 PDGFBP01127 241 aaPredicted RBP15.33■□□□□ 0.05
LINC00339-211ENST00000641009 THP07101 528 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 RPL17P18621 184 aaKnown RBP15.33■□□□□ 0.05
LINC00339-211ENST00000641009 EFNA5P52803 228 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 NHLH1Q02575 133 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 USP41Q3LFD5 358 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 NT5DC1Q5TFE4 455 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 ATF7IP2Q5U623 682 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 KRT79Q5XKE5 535 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 DTHD1Q6ZMT9 781 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 C15orf39Q6ZRI6 1047 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 CCDC149Q6ZUS6 474 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 KCNK18Q7Z418 384 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 PALB2Q86YC2 1186 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 RIN2Q8WYP3 895 aaPredicted RBP15.33■□□□□ 0.05
LINC00339-211ENST00000641009 MMTAG2Q9BU76 263 aaKnown RBP15.33■□□□□ 0.05
LINC00339-211ENST00000641009 DNM3Q9UQ16 869 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 KIF3AQ9Y496 699 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 STK24Q9Y6E0 443 aa15.33■□□□□ 0.05
LINC00339-211ENST00000641009 CCDC169A6NNP5 214 aa15.33■□□□□ 0.04
LINC00339-211ENST00000641009 HIP1RO75146 1068 aa15.33■□□□□ 0.04
LINC00339-211ENST00000641009 KIF4AO95239 1232 aa15.33■□□□□ 0.04
LINC00339-211ENST00000641009 GJB2P29033 226 aa15.33■□□□□ 0.04
LINC00339-211ENST00000641009 PRPHP41219 470 aa15.33■□□□□ 0.04
LINC00339-211ENST00000641009 VCPP55072 806 aaKnown RBP15.33■□□□□ 0.04
LINC00339-211ENST00000641009 PEX3P56589 373 aa15.33■□□□□ 0.04
LINC00339-211ENST00000641009 NAB2Q15742 525 aa15.33■□□□□ 0.04
LINC00339-211ENST00000641009 DCAF4L1Q3SXM0 396 aa15.33■□□□□ 0.04
LINC00339-211ENST00000641009 RTP2Q5QGT7 225 aa15.33■□□□□ 0.04
LINC00339-211ENST00000641009 PRSS55Q6UWB4 352 aaPredicted RBP15.33■□□□□ 0.04
LINC00339-211ENST00000641009 DAW1Q8N136 415 aa15.33■□□□□ 0.04
LINC00339-211ENST00000641009 PLCD3Q8N3E9 789 aa15.33■□□□□ 0.04
LINC00339-211ENST00000641009 RUSC1Q9BVN2 902 aa15.33■□□□□ 0.04
LINC00339-211ENST00000641009 SF3B1O75533 1304 aaKnown RBP eCLIP15.32■□□□□ 0.04
LINC00339-211ENST00000641009 CACNA1HO95180 2353 aa15.32■□□□□ 0.04
LINC00339-211ENST00000641009 K7ERI5 159 aa15.32■□□□□ 0.04
LINC00339-211ENST00000641009 TGM5O43548 720 aa15.32■□□□□ 0.04
LINC00339-211ENST00000641009 NPTX2P47972 431 aa15.32■□□□□ 0.04
LINC00339-211ENST00000641009 ZRSR1Q15695 479 aaKnown RBP15.32■□□□□ 0.04
LINC00339-211ENST00000641009 RINT1Q6NUQ1 792 aa15.32■□□□□ 0.04
LINC00339-211ENST00000641009 UBALD2Q8IYN6 164 aa15.32■□□□□ 0.04
LINC00339-211ENST00000641009 PRSS33Q8NF86 280 aa15.32■□□□□ 0.04
LINC00339-211ENST00000641009 CMASQ8NFW8 434 aaPredicted RBP15.32■□□□□ 0.04
LINC00339-211ENST00000641009 ACSF2Q96CM8 615 aaPredicted RBP15.32■□□□□ 0.04
LINC00339-211ENST00000641009 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.32■□□□□ 0.04
LINC00339-211ENST00000641009 FNIP2Q9P278 1114 aa15.32■□□□□ 0.04
LINC00339-211ENST00000641009 DPP7Q9UHL4 492 aa15.32■□□□□ 0.04
LINC00339-211ENST00000641009 PHLPP2Q6ZVD8 1323 aa15.31■□□□□ 0.04
LINC00339-211ENST00000641009 H3BQV1 296 aa15.31■□□□□ 0.04
LINC00339-211ENST00000641009 ATP2C1P98194 919 aaPredicted RBP15.31■□□□□ 0.04
LINC00339-211ENST00000641009 MAPK7Q13164 816 aa15.31■□□□□ 0.04
LINC00339-211ENST00000641009 RILPL1Q5EBL4 403 aa15.31■□□□□ 0.04
LINC00339-211ENST00000641009 GLRA4Q5JXX5 417 aa15.31■□□□□ 0.04
LINC00339-211ENST00000641009 ELMSAN1Q6PJG2 1045 aa15.31■□□□□ 0.04
LINC00339-211ENST00000641009 OTOP3Q7RTS5 596 aa15.31■□□□□ 0.04
LINC00339-211ENST00000641009 ALYREFQ86V81 257 aaKnown RBP15.31■□□□□ 0.04
LINC00339-211ENST00000641009 CEP57Q86XR8 500 aa15.31■□□□□ 0.04
LINC00339-211ENST00000641009 CEP120Q8N960 986 aa15.31■□□□□ 0.04
LINC00339-211ENST00000641009 MYH15Q9Y2K3 1946 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 N4BP1O75113 896 aaKnown RBP15.3■□□□□ 0.04
LINC00339-211ENST00000641009 IGFBP6P24592 240 aaPredicted RBP15.3■□□□□ 0.04
LINC00339-211ENST00000641009 DMP1Q13316 513 aaPredicted RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms