RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CISD2Q8N5K1 135 aaKnown RBP1.01□□□□□ -2.25
VPS35-212ENST00000640313 MSL3Q8N5Y2 521 aaKnown RBP1.01□□□□□ -2.25
VPS35-212ENST00000640313 OR56A1Q8NGH5 318 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 ZFP28Q8NHY6 868 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 NSMCE1Q8WV22 266 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 CASKIN2Q8WXE0 1202 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 NACC2Q96BF6 587 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 CELF4Q9BZC1 486 aaKnown RBP1.01□□□□□ -2.25
VPS35-212ENST00000640313 TXLNGQ9NUQ3 528 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 INTS7Q9NVH2 962 aaKnown RBP1.01□□□□□ -2.25
VPS35-212ENST00000640313 KLHL11Q9NVR0 708 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 EPB41L3Q9Y2J2 1087 aaPredicted RBP1.01□□□□□ -2.25
VPS35-212ENST00000640313 PCDHA9Q9Y5H5 950 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 A0A1B0GTW7 788 aa1□□□□□ -2.25
VPS35-212ENST00000640313 PRSS47A8MTI9 375 aa1□□□□□ -2.25
VPS35-212ENST00000640313 SCAMP3O14828 347 aaKnown RBP1□□□□□ -2.25
VPS35-212ENST00000640313 MPPED1O15442 326 aa1□□□□□ -2.25
VPS35-212ENST00000640313 PEX1O43933 1283 aa1□□□□□ -2.25
VPS35-212ENST00000640313 OPHN1O60890 802 aa1□□□□□ -2.25
VPS35-212ENST00000640313 EFCAB14O75071 495 aa1□□□□□ -2.25
VPS35-212ENST00000640313 ERN1O75460 977 aaKnown RBP1□□□□□ -2.25
VPS35-212ENST00000640313 LY86O95711 162 aa1□□□□□ -2.25
VPS35-212ENST00000640313 CRTAMO95727 393 aa1□□□□□ -2.25
VPS35-212ENST00000640313 CYP17A1P05093 508 aa1□□□□□ -2.25
VPS35-212ENST00000640313 ATF4P18848 351 aaPredicted RBP1□□□□□ -2.25
VPS35-212ENST00000640313 GRIA3P42263 894 aa1□□□□□ -2.25
VPS35-212ENST00000640313 THBS3P49746 956 aa1□□□□□ -2.25
VPS35-212ENST00000640313 VAV2P52735 878 aa1□□□□□ -2.25
VPS35-212ENST00000640313 CHN2P52757 468 aa1□□□□□ -2.25
VPS35-212ENST00000640313 GABREP78334 506 aa1□□□□□ -2.25
VPS35-212ENST00000640313 IRF9Q00978 393 aa1□□□□□ -2.25
VPS35-212ENST00000640313 CD69Q07108 199 aa1□□□□□ -2.25
VPS35-212ENST00000640313 ERV3-1Q14264 604 aa1□□□□□ -2.25
VPS35-212ENST00000640313 CYP2A13Q16696 494 aa1□□□□□ -2.25
VPS35-212ENST00000640313 NBPF8Q3BBV2 869 aa1□□□□□ -2.25
VPS35-212ENST00000640313 TSTD2Q5T7W7 516 aa1□□□□□ -2.25
VPS35-212ENST00000640313 FOXB2Q5VYV0 432 aa1□□□□□ -2.25
VPS35-212ENST00000640313 C18orf65Q6ZTR6 163 aa1□□□□□ -2.25
VPS35-212ENST00000640313 YTHDF3Q7Z739 585 aaKnown RBP1□□□□□ -2.25
VPS35-212ENST00000640313 C14orf37Q86TY3 774 aa1□□□□□ -2.25
VPS35-212ENST00000640313 ST13P5Q8NFI4 369 aaPredicted RBP1□□□□□ -2.25
VPS35-212ENST00000640313 TFAP2CQ92754 450 aa1□□□□□ -2.25
VPS35-212ENST00000640313 ZNF669Q96BR6 464 aaPredicted RBP1□□□□□ -2.25
VPS35-212ENST00000640313 PTCD3Q96EY7 689 aaKnown RBP1□□□□□ -2.25
VPS35-212ENST00000640313 HIST1H2AHQ96KK5 128 aa1□□□□□ -2.25
VPS35-212ENST00000640313 LYZL4Q96KX0 146 aa1□□□□□ -2.25
VPS35-212ENST00000640313 CTAGE1Q96RT6 745 aa1□□□□□ -2.25
VPS35-212ENST00000640313 TUBGCP5Q96RT8 1024 aa1□□□□□ -2.25
VPS35-212ENST00000640313 HIST1H2AJQ99878 128 aa1□□□□□ -2.25
VPS35-212ENST00000640313 NOL10Q9BSC4 688 aaKnown RBP1□□□□□ -2.25
VPS35-212ENST00000640313 MTG2Q9H4K7 406 aa1□□□□□ -2.25
VPS35-212ENST00000640313 TUBA8Q9NY65 449 aaPredicted RBP1□□□□□ -2.25
VPS35-212ENST00000640313 KCNE5Q9UJ90 142 aa1□□□□□ -2.25
VPS35-212ENST00000640313 ADAM21Q9UKJ8 722 aa1□□□□□ -2.25
VPS35-212ENST00000640313 MRVI1Q9Y6F6 885 aa1□□□□□ -2.25
VPS35-212ENST00000640313 ZMYM3Q14202 1370 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 A0A1W2PR48 441 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 FAM90A10PA6NDY2 464 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 PPP6CO00743 305 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 DVL2O14641 736 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 PJA2O43164 708 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 PROM1O43490 865 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 GAS8-AS1O95177 125 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 OAZ2O95190 189 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 ELFN1P0C7U0 828 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 SFPQP23246 707 aaKnown RBP eCLIP0.99□□□□□ -2.25
VPS35-212ENST00000640313 EPHB2P29323 1055 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 ETFBP38117 255 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 MMP13P45452 471 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 PLCD1P51178 756 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 MAPK10P53779 464 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 SUMO1P63165 101 aaKnown RBP0.99□□□□□ -2.25
VPS35-212ENST00000640313 ADCY2Q08462 1091 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 EPHA7Q15375 998 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 ARHGAP44Q17R89 818 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 PXDC1Q5TGL8 231 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 PRAMEF9Q5VWM5 478 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 TSHZ3Q63HK5 1081 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 KAZNQ674X7 775 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 SUMO4Q6EEV6 95 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 SLC18B1Q6NT16 456 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 FBXL22Q6P050 247 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 VWA1Q6PCB0 445 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 ZNF66Q6ZN08 573 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 ANKS3Q6ZW76 656 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 AMIGO2Q86SJ2 522 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 FOXP4Q8IVH2 680 aaPredicted RBP0.99□□□□□ -2.25
VPS35-212ENST00000640313 COLGALT2Q8IYK4 626 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 C2orf69Q8N8R5 385 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 RNF169Q8NCN4 708 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 ACRBPQ8NEB7 543 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 TMEM255BQ8WV15 326 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 RNF31Q96EP0 1072 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 VCPIP1Q96JH7 1222 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 BOCQ9BWV1 1114 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 QTRT1Q9BXR0 403 aaKnown RBP0.99□□□□□ -2.25
VPS35-212ENST00000640313 TRIM55Q9BYV6 548 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 SPRTNQ9H040 489 aaPredicted RBP0.99□□□□□ -2.25
VPS35-212ENST00000640313 VPS16Q9H269 839 aa0.99□□□□□ -2.25
VPS35-212ENST00000640313 RNPEPQ9H4A4 650 aa0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms