RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 TBC1D7Q9P0N9 293 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 KANSL3Q9P2N6 904 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 TBX20Q9UMR3 447 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 EYSQ5T1H1 3165 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.79□□□□□ -0.68
CLN3-261ENST00000637686 FRMD3A2A2Y4 597 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 NT5C1B-RDH14C9J2C7 533 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 INPPL1O15357 1258 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 B4GALT3O60512 393 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 ZC3H11AO75152 810 aaKnown RBP eCLIP10.79□□□□□ -0.68
CLN3-261ENST00000637686 FGF18O76093 207 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 RECQL4O94761 1208 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 DDHD2O94830 711 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 HARSP12081 509 aaKnown RBP10.79□□□□□ -0.68
CLN3-261ENST00000637686 GAP43P17677 238 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 PROZP22891 400 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 DNAJB1P25685 340 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 AFMP43652 599 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 ALDH7A1P49419 539 aaKnown RBP10.79□□□□□ -0.68
CLN3-261ENST00000637686 SCNN1GP51170 649 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 GTF2BQ00403 316 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 PTPROQ16827 1216 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 ZNF568Q3ZCX4 644 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 ZC2HC1CQ53FD0 456 aaPredicted RBP10.79□□□□□ -0.68
CLN3-261ENST00000637686 HERC4Q5GLZ8 1057 aaPredicted RBP10.79□□□□□ -0.68
CLN3-261ENST00000637686 MPZL3Q6UWV2 235 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 ZPBP2Q6X784 338 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 ZNF720Q7Z2F6 126 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 APBB1IPQ7Z5R6 666 aaPredicted RBP10.79□□□□□ -0.68
CLN3-261ENST00000637686 CCDC65Q8IXS2 484 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 SLC17A8Q8NDX2 589 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 GSTCDQ8NEC7 633 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 POF1BQ8WVV4 589 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 KCNN1Q92952 543 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 SMARCE1Q969G3 411 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 FAM193BQ96PV7 902 aaPredicted RBP10.79□□□□□ -0.68
CLN3-261ENST00000637686 TRIM9Q9C026 710 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 LMAN2LQ9H0V9 348 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 CDT1Q9H211 546 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 MRPL44Q9H9J2 332 aaKnown RBP10.79□□□□□ -0.68
CLN3-261ENST00000637686 ANO10Q9NW15 660 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 ANKFY1Q9P2R3 1169 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 SEL1LQ9UBV2 794 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 DNAJB4Q9UDY4 337 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 GDAQ9Y2T3 454 aa10.79□□□□□ -0.68
CLN3-261ENST00000637686 SYCE3A1L190 88 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 ABLIM1O14639 778 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 TOM1L1O75674 476 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 GCNT3O95395 438 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 GALTP07902 379 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 MCF2P10911 925 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 SCP2P22307 547 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 CASP1P29466 404 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 PPP1R2P41236 205 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 GRM5P41594 1212 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 MATR3P43243 847 aaKnown RBP eCLIP10.78□□□□□ -0.68
CLN3-261ENST00000637686 SLC11A1P49279 550 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 LIG4P49917 911 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 OSTNP61366 133 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 ASIC1P78348 528 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 COASYQ13057 564 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 CAMK1Q14012 370 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 CAMK4Q16566 473 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 STX1AQ16623 288 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 COBLL1Q53SF7 1204 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 SASS6Q6UVJ0 657 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 UNC13DQ70J99 1090 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 GRAMD1CQ8IYS0 662 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 SLC39A11Q8N1S5 342 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 CEP120Q8N960 986 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 RPS6KC1Q96S38 1066 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 FGFBP2Q9BYJ0 223 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 HAPLN2Q9GZV7 340 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 CXCL16Q9H2A7 254 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 BLZF1Q9H2G9 400 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 ST6GALNAC4Q9H4F1 302 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 SPG21Q9NZD8 308 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 PCDHA5Q9Y5H7 936 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 TRANK1O15050 2925 aa10.78□□□□□ -0.68
CLN3-261ENST00000637686 PRRC2BQ5JSZ5 2229 aaKnown RBP10.78□□□□□ -0.68
CLN3-261ENST00000637686 PLXNA4Q9HCM2 1894 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 HNRNPDLO14979 420 aaKnown RBP10.77□□□□□ -0.69
CLN3-261ENST00000637686 CLDN3O15551 220 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 PPP1R37O75864 691 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 RHOBTB3O94955 611 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 PIGRP01833 764 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 ALDH2P05091 517 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 MYBP10242 640 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 ABCD1P33897 745 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 IRS1P35568 1242 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 PPM1AP35813 382 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 OR1G1P47890 313 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 CASP5P51878 434 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 NLRP12P59046 1061 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 ERVFC1P60507 584 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 PLCB3Q01970 1234 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 KRT17Q04695 432 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 MCL1Q07820 350 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 KCNA1Q09470 495 aa10.77□□□□□ -0.69
CLN3-261ENST00000637686 PSMD2Q13200 908 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms