RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CXCL16Q9H2A7 254 aa21.14■□□□□ 0.98
CLN3-260ENST00000637578 ODF2LQ9ULJ1 636 aa21.14■□□□□ 0.98
CLN3-260ENST00000637578 USP15Q9Y4E8 981 aaPredicted RBP21.14■□□□□ 0.98
CLN3-260ENST00000637578 NPHP3-ACAD11A0A0J9YXS1 232 aa21.14■□□□□ 0.97
CLN3-260ENST00000637578 ABLIM1O14639 778 aa21.14■□□□□ 0.97
CLN3-260ENST00000637578 NR1I2O75469 434 aa21.14■□□□□ 0.97
CLN3-260ENST00000637578 PROZP22891 400 aa21.14■□□□□ 0.97
CLN3-260ENST00000637578 MARCKSP29966 332 aaPredicted RBP21.14■□□□□ 0.97
CLN3-260ENST00000637578 FOXD4L6Q3SYB3 417 aaPredicted RBP21.14■□□□□ 0.97
CLN3-260ENST00000637578 FOXD4L3Q6VB84 417 aaPredicted RBP21.14■□□□□ 0.97
CLN3-260ENST00000637578 USP49Q70CQ1 688 aa21.14■□□□□ 0.97
CLN3-260ENST00000637578 APBB1IPQ7Z5R6 666 aaPredicted RBP21.14■□□□□ 0.97
CLN3-260ENST00000637578 SLC22A17Q8WUG5 538 aa21.14■□□□□ 0.97
CLN3-260ENST00000637578 RAD54LQ92698 747 aa21.14■□□□□ 0.97
CLN3-260ENST00000637578 CASP10Q92851 521 aa21.14■□□□□ 0.97
CLN3-260ENST00000637578 EPSTI1Q96J88 318 aa21.14■□□□□ 0.97
CLN3-260ENST00000637578 RPS6KC1Q96S38 1066 aa21.14■□□□□ 0.97
CLN3-260ENST00000637578 COLEC11Q9BWP8 271 aa21.14■□□□□ 0.97
CLN3-260ENST00000637578 MRPL4Q9BYD3 311 aaKnown RBP21.14■□□□□ 0.97
CLN3-260ENST00000637578 F8W810 466 aa21.13■□□□□ 0.97
CLN3-260ENST00000637578 MAPTP10636 758 aaKnown RBP21.13■□□□□ 0.97
CLN3-260ENST00000637578 SMTNP53814 917 aa21.13■□□□□ 0.97
CLN3-260ENST00000637578 TUSC3Q13454 348 aa21.13■□□□□ 0.97
CLN3-260ENST00000637578 SLC39A14Q15043 492 aa21.13■□□□□ 0.97
CLN3-260ENST00000637578 LLGL2Q6P1M3 1020 aa21.13■□□□□ 0.97
CLN3-260ENST00000637578 TAS1R1Q7RTX1 841 aa21.13■□□□□ 0.97
CLN3-260ENST00000637578 IPO9Q96P70 1041 aaKnown RBP21.13■□□□□ 0.97
CLN3-260ENST00000637578 USP28Q96RU2 1077 aa21.13■□□□□ 0.97
CLN3-260ENST00000637578 HERC2P3Q9BVR0 1158 aa21.13■□□□□ 0.97
CLN3-260ENST00000637578 TARS2Q9BW92 718 aaKnown RBP21.13■□□□□ 0.97
CLN3-260ENST00000637578 LARSQ9P2J5 1176 aaKnown RBP21.13■□□□□ 0.97
CLN3-260ENST00000637578 C5orf42Q9H799 3197 aa21.13■□□□□ 0.97
CLN3-260ENST00000637578 THP07101 528 aa21.12■□□□□ 0.97
CLN3-260ENST00000637578 ZNF131P52739 623 aa21.12■□□□□ 0.97
CLN3-260ENST00000637578 MCM6Q14566 821 aa21.12■□□□□ 0.97
CLN3-260ENST00000637578 KIAA0319Q5VV43 1072 aa21.12■□□□□ 0.97
CLN3-260ENST00000637578 POP1Q99575 1024 aaKnown RBP21.12■□□□□ 0.97
CLN3-260ENST00000637578 REEP2Q9BRK0 252 aa21.12■□□□□ 0.97
CLN3-260ENST00000637578 CDT1Q9H211 546 aa21.12■□□□□ 0.97
CLN3-260ENST00000637578 MRPL17Q9NRX2 175 aaKnown RBP21.12■□□□□ 0.97
CLN3-260ENST00000637578 CHST7Q9NS84 486 aa21.12■□□□□ 0.97
CLN3-260ENST00000637578 TDRD15B5MCY1 1934 aaKnown RBP21.12■□□□□ 0.97
CLN3-260ENST00000637578 PI4K2BG5E9Z4 385 aa21.11■□□□□ 0.97
CLN3-260ENST00000637578 SSTR3P32745 418 aaPredicted RBP21.11■□□□□ 0.97
CLN3-260ENST00000637578 GRM5P41594 1212 aa21.11■□□□□ 0.97
CLN3-260ENST00000637578 NASPP49321 788 aaPredicted RBP21.11■□□□□ 0.97
CLN3-260ENST00000637578 NCKAP1LP55160 1127 aa21.11■□□□□ 0.97
CLN3-260ENST00000637578 NUCB2P80303 420 aa21.11■□□□□ 0.97
CLN3-260ENST00000637578 CEBPZQ03701 1054 aaKnown RBP21.11■□□□□ 0.97
CLN3-260ENST00000637578 XKR4Q5GH76 650 aa21.11■□□□□ 0.97
CLN3-260ENST00000637578 ALKAL1Q6UXT8 129 aa21.11■□□□□ 0.97
CLN3-260ENST00000637578 GPBP1Q86WP2 473 aa21.11■□□□□ 0.97
CLN3-260ENST00000637578 GPR65Q8IYL9 337 aa21.11■□□□□ 0.97
CLN3-260ENST00000637578 KLHL5Q96PQ7 755 aa21.11■□□□□ 0.97
CLN3-260ENST00000637578 EPHX3Q9H6B9 360 aa21.11■□□□□ 0.97
CLN3-260ENST00000637578 ADAM28Q9UKQ2 775 aa21.11■□□□□ 0.97
CLN3-260ENST00000637578 SSX2IPQ9Y2D8 614 aa21.11■□□□□ 0.97
CLN3-260ENST00000637578 GDAQ9Y2T3 454 aa21.11■□□□□ 0.97
CLN3-260ENST00000637578 CNPP09543 421 aaKnown RBP21.1■□□□□ 0.97
CLN3-260ENST00000637578 MCF2P10911 925 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 CA8P35219 290 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 DSG1Q02413 1049 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 CACNB1Q02641 598 aaPredicted RBP21.1■□□□□ 0.97
CLN3-260ENST00000637578 SPECC1Q5M775 1068 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 PPFIBP1Q86W92 1011 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 LARP4BQ92615 738 aaKnown RBP21.1■□□□□ 0.97
CLN3-260ENST00000637578 ZNF396Q96N95 335 aaPredicted RBP21.1■□□□□ 0.97
CLN3-260ENST00000637578 CLIC6Q96NY7 704 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 PPP1R10Q96QC0 940 aaKnown RBP21.1■□□□□ 0.97
CLN3-260ENST00000637578 PAAF1Q9BRP4 392 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 EMILIN2Q9BXX0 1053 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 GPR62Q9BZJ7 368 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 H0YCG3 227 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 SCP2P22307 547 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 STRN3Q13033 797 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 HSP90AA2PQ14568 343 aaPredicted RBP21.1■□□□□ 0.97
CLN3-260ENST00000637578 TPRNQ4KMQ1 711 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 FUT10Q6P4F1 479 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 MPZL3Q6UWV2 235 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 ZPBP2Q6X784 338 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 CEP120Q8N960 986 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 PHF7Q9BWX1 381 aaPredicted RBP21.1■□□□□ 0.97
CLN3-260ENST00000637578 ADAM7Q9H2U9 754 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 RXFP1Q9HBX9 757 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 TFIP11Q9UBB9 837 aaKnown RBP21.1■□□□□ 0.97
CLN3-260ENST00000637578 CACNG4Q9UBN1 327 aa21.1■□□□□ 0.97
CLN3-260ENST00000637578 CIZ1Q9ULV3 898 aaPredicted RBP21.1■□□□□ 0.97
CLN3-260ENST00000637578 LOC730098B7Z3J9 87 aa21.09■□□□□ 0.97
CLN3-260ENST00000637578 TOM1L1O75674 476 aa21.09■□□□□ 0.97
CLN3-260ENST00000637578 URODP06132 367 aa21.09■□□□□ 0.97
CLN3-260ENST00000637578 EPCAMP16422 314 aa21.09■□□□□ 0.97
CLN3-260ENST00000637578 GLUD2P49448 558 aa21.09■□□□□ 0.97
CLN3-260ENST00000637578 CLCN4P51793 760 aa21.09■□□□□ 0.97
CLN3-260ENST00000637578 ITIH3Q06033 890 aa21.09■□□□□ 0.97
CLN3-260ENST00000637578 CBX2Q14781 532 aaPredicted RBP21.09■□□□□ 0.97
CLN3-260ENST00000637578 ZNF568Q3ZCX4 644 aa21.09■□□□□ 0.97
CLN3-260ENST00000637578 HAUS6Q7Z4H7 955 aa21.09■□□□□ 0.97
CLN3-260ENST00000637578 TMEM87AQ8NBN3 555 aa21.09■□□□□ 0.97
CLN3-260ENST00000637578 RABGGTAQ92696 567 aa21.09■□□□□ 0.97
CLN3-260ENST00000637578 C1QTNF1Q9BXJ1 281 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms