RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 GPR65Q8IYL9 337 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 SLC39A11Q8N1S5 342 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 KLHL23Q8NBE8 558 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 RPS6KC1Q96S38 1066 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 TARS2Q9BW92 718 aaKnown RBP20.01■□□□□ 0.79
CLN3-259ENST00000637551 PANK2Q9BZ23 570 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 MRPL44Q9H9J2 332 aaKnown RBP20.01■□□□□ 0.79
CLN3-259ENST00000637551 CERS4Q9HA82 394 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 PLEKHA5Q9HAU0 1116 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 POLD4Q9HCU8 107 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 PUF60Q9UHX1 559 aaKnown RBP20.01■□□□□ 0.79
CLN3-259ENST00000637551 ATG2AQ2TAZ0 1938 aa20.01■□□□□ 0.79
CLN3-259ENST00000637551 PDCD11Q14690 1871 aaKnown RBP20.01■□□□□ 0.79
CLN3-259ENST00000637551 MEIS3P2A8K0S8 358 aa20■□□□□ 0.79
CLN3-259ENST00000637551 KIAA0391O15091 583 aaKnown RBP20■□□□□ 0.79
CLN3-259ENST00000637551 FGF18O76093 207 aa20■□□□□ 0.79
CLN3-259ENST00000637551 RECQL4O94761 1208 aa20■□□□□ 0.79
CLN3-259ENST00000637551 ITGB1P05556 798 aa20■□□□□ 0.79
CLN3-259ENST00000637551 MLH1P40692 756 aa20■□□□□ 0.79
CLN3-259ENST00000637551 LIG4P49917 911 aa20■□□□□ 0.79
CLN3-259ENST00000637551 YARSP54577 528 aaKnown RBP20■□□□□ 0.79
CLN3-259ENST00000637551 SNRPFP62306 86 aaKnown RBP20■□□□□ 0.79
CLN3-259ENST00000637551 HSP90AA2PQ14568 343 aaPredicted RBP20■□□□□ 0.79
CLN3-259ENST00000637551 POSTNQ15063 836 aa20■□□□□ 0.79
CLN3-259ENST00000637551 HERC4Q5GLZ8 1057 aaPredicted RBP20■□□□□ 0.79
CLN3-259ENST00000637551 EEF1DP3Q658K8 133 aa20■□□□□ 0.79
CLN3-259ENST00000637551 THNSL1Q8IYQ7 743 aa20■□□□□ 0.79
CLN3-259ENST00000637551 GSTCDQ8NEC7 633 aa20■□□□□ 0.79
CLN3-259ENST00000637551 SPPL3Q8TCT6 385 aa20■□□□□ 0.79
CLN3-259ENST00000637551 FAM193BQ96PV7 902 aaPredicted RBP20■□□□□ 0.79
CLN3-259ENST00000637551 GAD1Q99259 594 aa20■□□□□ 0.79
CLN3-259ENST00000637551 ZHX3Q9H4I2 956 aa20■□□□□ 0.79
CLN3-259ENST00000637551 NRDE2Q9H7Z3 1164 aa20■□□□□ 0.79
CLN3-259ENST00000637551 TMEM206Q9H813 350 aa20■□□□□ 0.79
CLN3-259ENST00000637551 TRIP11Q15643 1979 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 MYO7AQ13402 2215 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 GOLGA6L4A6NEF3 574 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 IDEP14735 1019 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 LIG1P18858 919 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 IGFBP4P22692 258 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 BCAR1P56945 870 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 COASYQ13057 564 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 BMS1Q14692 1282 aaKnown RBP19.99■□□□□ 0.79
CLN3-259ENST00000637551 COL19A1Q14993 1142 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 L1TD1Q5T7N2 865 aaKnown RBP19.99■□□□□ 0.79
CLN3-259ENST00000637551 TMEM87AQ8NBN3 555 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 BICD1Q96G01 975 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 TCHPQ9BT92 498 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 LRFN3Q9BTN0 628 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 RNF39Q9H2S5 420 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 NSUN3Q9H649 340 aaKnown RBP19.99■□□□□ 0.79
CLN3-259ENST00000637551 NGRNQ9NPE2 291 aaKnown RBP19.99■□□□□ 0.79
CLN3-259ENST00000637551 SLC38A7Q9NVC3 462 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 HCN4Q9Y3Q4 1203 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 HES2Q9Y543 173 aa19.99■□□□□ 0.79
CLN3-259ENST00000637551 A0A0B4J269 797 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 ZC3H11AO75152 810 aaKnown RBP eCLIP19.98■□□□□ 0.79
CLN3-259ENST00000637551 GALTP07902 379 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 CLTAP09496 248 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 IBSPP21815 317 aaPredicted RBP19.98■□□□□ 0.79
CLN3-259ENST00000637551 ASIC1P78348 528 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 TUSC3Q13454 348 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 ALKAL1Q6UXT8 129 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 CD302Q8IX05 232 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 ELOA2Q8IYF1 753 aaPredicted RBP19.98■□□□□ 0.79
CLN3-259ENST00000637551 COLGALT2Q8IYK4 626 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 TMEM169Q96HH4 297 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 IGSF21Q96ID5 467 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 UROC1Q96N76 676 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 ACAP3Q96P50 834 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 ACCSQ96QU6 501 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 TLR9Q9NR96 1032 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 CNTN3Q9P232 1028 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 PARP2Q9UGN5 583 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 INPP5FQ9Y2H2 1132 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 IRAK3Q9Y616 596 aa19.98■□□□□ 0.79
CLN3-259ENST00000637551 A0A1B0GVL5 298 aa19.97■□□□□ 0.79
CLN3-259ENST00000637551 OGTO15294 1046 aa19.97■□□□□ 0.79
CLN3-259ENST00000637551 GRM6O15303 877 aa19.97■□□□□ 0.79
CLN3-259ENST00000637551 ALDH2P05091 517 aa19.97■□□□□ 0.79
CLN3-259ENST00000637551 THP07101 528 aa19.97■□□□□ 0.79
CLN3-259ENST00000637551 ADRB2P07550 413 aa19.97■□□□□ 0.79
CLN3-259ENST00000637551 KCNE1P15382 129 aa19.97■□□□□ 0.79
CLN3-259ENST00000637551 NMT1P30419 496 aaKnown RBP19.97■□□□□ 0.79
CLN3-259ENST00000637551 PSMD2Q13200 908 aa19.97■□□□□ 0.79
CLN3-259ENST00000637551 DDX53Q86TM3 631 aaKnown RBP19.97■□□□□ 0.79
CLN3-259ENST00000637551 CDR2LQ86X02 465 aaPredicted RBP19.97■□□□□ 0.79
CLN3-259ENST00000637551 FSIP1Q8NA03 581 aa19.97■□□□□ 0.79
CLN3-259ENST00000637551 ZFP42Q96MM3 310 aa19.97■□□□□ 0.79
CLN3-259ENST00000637551 CDCA3Q99618 268 aaPredicted RBP19.97■□□□□ 0.79
CLN3-259ENST00000637551 SNTG2Q9NY99 539 aa19.97■□□□□ 0.79
CLN3-259ENST00000637551 CGNQ9P2M7 1197 aaKnown RBP19.97■□□□□ 0.79
CLN3-259ENST00000637551 COG5Q9UP83 839 aa19.97■□□□□ 0.79
CLN3-259ENST00000637551 TMEM189-UBE2V1I3L0A0 370 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 FSCN2O14926 492 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 FAM189A1O60320 539 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 GCNT3O95395 438 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 AKAP5P24588 427 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 SCNN1GP51170 649 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 NDUFA8P51970 172 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms