RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PDE11AQ9HCR9 933 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 COQ4Q9Y3A0 265 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 DAAM1Q9Y4D1 1078 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 SMIM35A0A1B0GVV1 85 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 SSU72P8A0A1W2PR75 194 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 KIF2AO00139 706 aaPredicted RBP18.27■□□□□ 0.52
CLN3-252ENST00000636907 OGTO15294 1046 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 RARBP10826 455 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 CYP2C9P11712 490 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 CCND3P30281 292 aaPredicted RBP18.27■□□□□ 0.52
CLN3-252ENST00000636907 TNFSF9P41273 254 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 KIF11P52732 1056 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 ASTE1Q2TB18 679 aaPredicted RBP18.27■□□□□ 0.52
CLN3-252ENST00000636907 GNASQ5JWF2 1037 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 RUFY4Q6ZNE9 571 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 IRF2BP2Q7Z5L9 587 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 ARHGEF19Q8IW93 802 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 SCLT1Q96NL6 688 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 DEF6Q9H4E7 631 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 LZTFL1Q9NQ48 299 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 TNFSF13BQ9Y275 285 aa18.27■□□□□ 0.52
CLN3-252ENST00000636907 CNTNAP2Q9UHC6 1331 aa18.27■□□□□ 0.51
CLN3-252ENST00000636907 GPR25O00155 361 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 ZNF263O14978 683 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 PNMA6AP0CW24 399 aaPredicted RBP18.26■□□□□ 0.51
CLN3-252ENST00000636907 PRKAR2AP13861 404 aaKnown RBP18.26■□□□□ 0.51
CLN3-252ENST00000636907 TNNI1P19237 187 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 HOXD10P28358 340 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 KRT83P78385 493 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 KLHL30Q0D2K2 578 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 TMEM62Q0P6H9 643 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 DRAP1Q14919 205 aaPredicted RBP18.26■□□□□ 0.51
CLN3-252ENST00000636907 ZNF568Q3ZCX4 644 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 C15orf39Q6ZRI6 1047 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 BRSK2Q8IWQ3 736 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 FBXL13Q8NEE6 735 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 TAS1R2Q8TE23 839 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 PRIMPOLQ96LW4 560 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 GPR88Q9GZN0 384 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 ADAMTS10Q9H324 1103 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 HDAC6Q9UBN7 1215 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 PTPRJQ12913 1337 aa18.26■□□□□ 0.51
CLN3-252ENST00000636907 C17orf102A2RUQ5 167 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 F8VZ95 297 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 TREHO43280 583 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 AKR1B10O60218 316 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 KPNA6O60684 536 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 RFX1P22670 979 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 STAT1P42224 750 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 ARHGAP25P42331 645 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 ZNF200P98182 395 aaPredicted RBP18.25■□□□□ 0.51
CLN3-252ENST00000636907 CYP27A1Q02318 531 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 ENOX2Q16206 610 aaKnown RBP18.25■□□□□ 0.51
CLN3-252ENST00000636907 KIZQ2M2Z5 673 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 ZNF592Q92610 1267 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 CGRRF1Q99675 332 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 MTG1Q9BT17 334 aaPredicted RBP18.25■□□□□ 0.51
CLN3-252ENST00000636907 CDT1Q9H211 546 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 HAUS4Q9H6D7 363 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 SPC25Q9HBM1 224 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 UBE2TQ9NPD8 197 aaPredicted RBP18.25■□□□□ 0.51
CLN3-252ENST00000636907 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.25■□□□□ 0.51
CLN3-252ENST00000636907 RAB20Q9NX57 234 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 CPSF3Q9UKF6 684 aaKnown RBP18.25■□□□□ 0.51
CLN3-252ENST00000636907 R3HCC1Q9Y3T6 440 aaKnown RBP18.25■□□□□ 0.51
CLN3-252ENST00000636907 ADAMTS4O75173 837 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 GPR32O75388 356 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 IPO7O95373 1038 aaKnown RBP18.25■□□□□ 0.51
CLN3-252ENST00000636907 LCA5LO95447 670 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 ABL1P00519 1130 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 C4BPAP04003 597 aaKnown RBP18.25■□□□□ 0.51
CLN3-252ENST00000636907 HOXC8P31273 242 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 SOX5P35711 763 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 PRKCIP41743 596 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 ETF1P62495 437 aaKnown RBP18.25■□□□□ 0.51
CLN3-252ENST00000636907 NKX3-2P78367 333 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 ARHGAP44Q17R89 818 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 SYT10Q6XYQ8 523 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 SRGAP1Q7Z6B7 1085 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 C7orf31Q8N865 590 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 CPB2Q96IY4 423 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 PDZD7Q9H5P4 517 aa18.25■□□□□ 0.51
CLN3-252ENST00000636907 THSD7BQ9C0I4 1608 aa18.24■□□□□ 0.51
CLN3-252ENST00000636907 GFPT2O94808 682 aa18.24■□□□□ 0.51
CLN3-252ENST00000636907 TUBB4AP04350 444 aa18.24■□□□□ 0.51
CLN3-252ENST00000636907 ARF4P18085 180 aaPredicted RBP18.24■□□□□ 0.51
CLN3-252ENST00000636907 GFPT1Q06210 699 aaPredicted RBP18.24■□□□□ 0.51
CLN3-252ENST00000636907 SPA17Q15506 151 aa18.24■□□□□ 0.51
CLN3-252ENST00000636907 ZACNQ401N2 412 aa18.24■□□□□ 0.51
CLN3-252ENST00000636907 ARHGAP29Q52LW3 1261 aa18.24■□□□□ 0.51
CLN3-252ENST00000636907 TDRD10Q5VZ19 366 aaKnown RBP18.24■□□□□ 0.51
CLN3-252ENST00000636907 CXCL17Q6UXB2 119 aa18.24■□□□□ 0.51
CLN3-252ENST00000636907 THNSL1Q8IYQ7 743 aa18.24■□□□□ 0.51
CLN3-252ENST00000636907 DNAJB3Q8WWF6 145 aa18.24■□□□□ 0.51
CLN3-252ENST00000636907 XPNPEP3Q9NQH7 507 aa18.24■□□□□ 0.51
CLN3-252ENST00000636907 TFR2Q9UP52 801 aa18.24■□□□□ 0.51
CLN3-252ENST00000636907 TSPAN1O60635 241 aa18.23■□□□□ 0.51
CLN3-252ENST00000636907 HMGCRP04035 888 aa18.23■□□□□ 0.51
CLN3-252ENST00000636907 FERP16591 822 aa18.23■□□□□ 0.51
CLN3-252ENST00000636907 OSTNP61366 133 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms