RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 PRR33A8MZF0 331 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 TRAK2O60296 914 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 ZC3H11AO75152 810 aaKnown RBP eCLIP19.89■□□□□ 0.77
CLN3-243ENST00000635973 GLP2RO95838 553 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 ATF7P17544 494 aaPredicted RBP19.89■□□□□ 0.77
CLN3-243ENST00000635973 GAP43P17677 238 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 ARF4P18085 180 aaPredicted RBP19.89■□□□□ 0.77
CLN3-243ENST00000635973 AFMP43652 599 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 BCAR1P56945 870 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 ASIC1P78348 528 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 SMC1AQ14683 1233 aaKnown RBP19.89■□□□□ 0.77
CLN3-243ENST00000635973 AMHR2Q16671 573 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 FAM187BQ17R55 369 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 SFR1Q86XK3 245 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 CCDC65Q8IXS2 484 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 LPPQ93052 612 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 TRIM6Q9C030 488 aaPredicted RBP19.89■□□□□ 0.77
CLN3-243ENST00000635973 FZD8Q9H461 694 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 CNTNAP2Q9UHC6 1331 aa19.89■□□□□ 0.77
CLN3-243ENST00000635973 FAM237AA0A1B0GTK4 181 aa19.88■□□□□ 0.77
CLN3-243ENST00000635973 ACKR2O00590 384 aa19.88■□□□□ 0.77
CLN3-243ENST00000635973 N4BP3O15049 544 aa19.88■□□□□ 0.77
CLN3-243ENST00000635973 ACTN4O43707 911 aaKnown RBP19.88■□□□□ 0.77
CLN3-243ENST00000635973 SLFN14P0C7P3 912 aa19.88■□□□□ 0.77
CLN3-243ENST00000635973 HOXA11P31270 313 aaPredicted RBP19.88■□□□□ 0.77
CLN3-243ENST00000635973 LLGL2Q6P1M3 1020 aa19.88■□□□□ 0.77
CLN3-243ENST00000635973 SLC39A11Q8N1S5 342 aa19.88■□□□□ 0.77
CLN3-243ENST00000635973 URGCPQ8TCY9 931 aa19.88■□□□□ 0.77
CLN3-243ENST00000635973 DNAJC19Q96DA6 116 aa19.88■□□□□ 0.77
CLN3-243ENST00000635973 CCDC34Q96HJ3 373 aa19.88■□□□□ 0.77
CLN3-243ENST00000635973 MRPL4Q9BYD3 311 aaKnown RBP19.88■□□□□ 0.77
CLN3-243ENST00000635973 TRIM9Q9C026 710 aa19.88■□□□□ 0.77
CLN3-243ENST00000635973 TMEM134Q9H6X4 195 aa19.88■□□□□ 0.77
CLN3-243ENST00000635973 PANK4Q9NVE7 773 aa19.88■□□□□ 0.77
CLN3-243ENST00000635973 SEL1LQ9UBV2 794 aa19.88■□□□□ 0.77
CLN3-243ENST00000635973 USP15Q9Y4E8 981 aaPredicted RBP19.88■□□□□ 0.77
CLN3-243ENST00000635973 ARIH1Q9Y4X5 557 aaPredicted RBP19.88■□□□□ 0.77
CLN3-243ENST00000635973 NT5C1B-RDH14C9J2C7 533 aa19.87■□□□□ 0.77
CLN3-243ENST00000635973 NCKAP1LP55160 1127 aa19.87■□□□□ 0.77
CLN3-243ENST00000635973 HERC4Q5GLZ8 1057 aaPredicted RBP19.87■□□□□ 0.77
CLN3-243ENST00000635973 NOMO2Q5JPE7 1267 aa19.87■□□□□ 0.77
CLN3-243ENST00000635973 HAUS6Q7Z4H7 955 aa19.87■□□□□ 0.77
CLN3-243ENST00000635973 TMEM161BQ8NDZ6 487 aa19.87■□□□□ 0.77
CLN3-243ENST00000635973 CNNM3Q8NE01 707 aa19.87■□□□□ 0.77
CLN3-243ENST00000635973 BICD1Q96G01 975 aa19.87■□□□□ 0.77
CLN3-243ENST00000635973 ADPGKQ9BRR6 497 aa19.87■□□□□ 0.77
CLN3-243ENST00000635973 NTPCRQ9BSD7 190 aaKnown RBP19.87■□□□□ 0.77
CLN3-243ENST00000635973 GBP3Q9H0R5 595 aa19.87■□□□□ 0.77
CLN3-243ENST00000635973 BLZF1Q9H2G9 400 aa19.87■□□□□ 0.77
CLN3-243ENST00000635973 MRPL44Q9H9J2 332 aaKnown RBP19.87■□□□□ 0.77
CLN3-243ENST00000635973 PCDHB2Q9Y5E7 798 aa19.87■□□□□ 0.77
CLN3-243ENST00000635973 HIDE1A8MVS5 230 aa19.86■□□□□ 0.77
CLN3-243ENST00000635973 ZNF623O75123 536 aa19.86■□□□□ 0.77
CLN3-243ENST00000635973 ZNF202O95125 648 aa19.86■□□□□ 0.77
CLN3-243ENST00000635973 MAPTP10636 758 aaKnown RBP19.86■□□□□ 0.77
CLN3-243ENST00000635973 SCP2P22307 547 aa19.86■□□□□ 0.77
CLN3-243ENST00000635973 RBM10P98175 930 aaKnown RBP19.86■□□□□ 0.77
CLN3-243ENST00000635973 ATF7IP2Q5U623 682 aa19.86■□□□□ 0.77
CLN3-243ENST00000635973 SLC27A1Q6PCB7 646 aa19.86■□□□□ 0.77
CLN3-243ENST00000635973 CDR2LQ86X02 465 aaPredicted RBP19.86■□□□□ 0.77
CLN3-243ENST00000635973 RNF135Q8IUD6 432 aa19.86■□□□□ 0.77
CLN3-243ENST00000635973 GRAMD1CQ8IYS0 662 aa19.86■□□□□ 0.77
CLN3-243ENST00000635973 HACE1Q8IYU2 909 aa19.86■□□□□ 0.77
CLN3-243ENST00000635973 PAGE5Q96GU1 130 aa19.86■□□□□ 0.77
CLN3-243ENST00000635973 FAM193BQ96PV7 902 aaPredicted RBP19.86■□□□□ 0.77
CLN3-243ENST00000635973 C7orf25Q9BPX7 421 aa19.86■□□□□ 0.77
CLN3-243ENST00000635973 TBC1D7Q9P0N9 293 aa19.86■□□□□ 0.77
CLN3-243ENST00000635973 USP20Q9Y2K6 914 aa19.86■□□□□ 0.77
CLN3-243ENST00000635973 A0A1B0GUA9 196 aa19.85■□□□□ 0.77
CLN3-243ENST00000635973 NPTXRO95502 500 aa19.85■□□□□ 0.77
CLN3-243ENST00000635973 CXCL14O95715 111 aa19.85■□□□□ 0.77
CLN3-243ENST00000635973 NMT1P30419 496 aaKnown RBP19.85■□□□□ 0.77
CLN3-243ENST00000635973 HOXD11P31277 338 aaPredicted RBP19.85■□□□□ 0.77
CLN3-243ENST00000635973 ABCD1P33897 745 aa19.85■□□□□ 0.77
CLN3-243ENST00000635973 ANKRD54Q6NXT1 300 aa19.85■□□□□ 0.77
CLN3-243ENST00000635973 TAS1R3Q7RTX0 852 aa19.85■□□□□ 0.77
CLN3-243ENST00000635973 APBB1IPQ7Z5R6 666 aaPredicted RBP19.85■□□□□ 0.77
CLN3-243ENST00000635973 MRPL43Q8N983 215 aaKnown RBP19.85■□□□□ 0.77
CLN3-243ENST00000635973 VN1R2Q8NFZ6 395 aa19.85■□□□□ 0.77
CLN3-243ENST00000635973 CASP10Q92851 521 aa19.85■□□□□ 0.77
CLN3-243ENST00000635973 RPGRIP1Q96KN7 1286 aa19.85■□□□□ 0.77
CLN3-243ENST00000635973 PHF7Q9BWX1 381 aaPredicted RBP19.85■□□□□ 0.77
CLN3-243ENST00000635973 EIF2AQ9BY44 585 aaKnown RBP19.85■□□□□ 0.77
CLN3-243ENST00000635973 PDZD7Q9H5P4 517 aa19.85■□□□□ 0.77
CLN3-243ENST00000635973 TBC1D13Q9NVG8 400 aa19.85■□□□□ 0.77
CLN3-243ENST00000635973 MUTYHQ9UIF7 546 aa19.85■□□□□ 0.77
CLN3-243ENST00000635973 C5orf42Q9H799 3197 aa19.85■□□□□ 0.77
CLN3-243ENST00000635973 FRMD3A2A2Y4 597 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 TTLL13PA6NNM8 815 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 OFD1O75665 1012 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 GCNT3O95395 438 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 EDN1P05305 212 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 HOXB8P17481 243 aaPredicted RBP19.84■□□□□ 0.77
CLN3-243ENST00000635973 CASP1P29466 404 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 FAM160A1Q05DH4 1040 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 CUL4BQ13620 913 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 UBXN11Q5T124 520 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 NT5DC1Q5TFE4 455 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 TMEM184AQ6ZMB5 413 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 KRBA2Q6ZNG9 492 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms