RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 COL4A5P29400 1685 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 TCRBV7S2A1N4TA0A589 114 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 ATMINO43313 823 aaPredicted RBP13.7□□□□□ -0.22
LINC00540-203ENST00000631321 RARAP10276 462 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 DRD4P21917 467 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 CNGA1P29973 690 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 PDE6CP51160 858 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 RWDD2BP57060 319 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 RPS6P62753 249 aaKnown RBP13.7□□□□□ -0.22
LINC00540-203ENST00000631321 ACTN3Q08043 901 aaPredicted RBP13.7□□□□□ -0.22
LINC00540-203ENST00000631321 IFT88Q13099 833 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 SLMAPQ14BN4 828 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 QPCTQ16769 361 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 XKR9Q5GH70 373 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 TNFAIP8L3Q5GJ75 292 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 ICE2Q659A1 982 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 ACAD10Q6JQN1 1059 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 FBXL13Q8NEE6 735 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 ZNF653Q96CK0 615 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 NT5C1BQ96P26 610 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 XPO6Q96QU8 1125 aaKnown RBP13.7□□□□□ -0.22
LINC00540-203ENST00000631321 SENP7Q9BQF6 1050 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 C17orf75Q9HAS0 396 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 RAVER2Q9HCJ3 691 aaKnown RBP13.7□□□□□ -0.22
LINC00540-203ENST00000631321 ACP6Q9NPH0 428 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 PNMA2Q9UL42 364 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 FSCN2O14926 492 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 SPOPO43791 374 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 ATP9AO75110 1047 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 RARGP13631 454 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 EIF2AK2P19525 551 aaKnown RBP13.7□□□□□ -0.22
LINC00540-203ENST00000631321 ADCY2Q08462 1091 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 DMP1Q13316 513 aaPredicted RBP13.7□□□□□ -0.22
LINC00540-203ENST00000631321 C6orf118Q5T5N4 469 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 LARGE2Q8N3Y3 721 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 KIFAP3Q92845 792 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 SEC16BQ96JE7 1060 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 SH2D3AQ9BRG2 576 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 PDCD2LQ9BRP1 358 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 RAB20Q9NX57 234 aa13.7□□□□□ -0.22
LINC00540-203ENST00000631321 AGTP01019 485 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 HNRNPH1P31943 449 aaKnown RBP13.69□□□□□ -0.22
LINC00540-203ENST00000631321 CYP24A1Q07973 514 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 SLC29A2Q14542 456 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 CLEC16AQ2KHT3 1053 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 ZNF568Q3ZCX4 644 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 FBXW10Q5XX13 1052 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 PLA2G4FQ68DD2 849 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 XRRA1Q6P2D8 792 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 SLC39A4Q6P5W5 647 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 KCNV1Q6PIU1 500 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 ENOSF1Q7L5Y1 443 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 CPNE8Q86YQ8 564 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 TAS1R2Q8TE23 839 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 SAAL1Q96ER3 474 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 BTBD6Q96KE9 485 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 VPS33BQ9H267 617 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 ADAM7Q9H2U9 754 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 SEMA4AQ9H3S1 761 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 PXMP2Q9NR77 195 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 GINM1Q9NU53 330 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 PASKQ96RG2 1323 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 DENND3A2RUS2 1198 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 ZC3H11AO75152 810 aaKnown RBP eCLIP13.69□□□□□ -0.22
LINC00540-203ENST00000631321 GCNT1Q02742 428 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 RNF187Q5TA31 235 aaPredicted RBP13.69□□□□□ -0.22
LINC00540-203ENST00000631321 ANO5Q75V66 913 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 USP37Q86T82 979 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 CPXCR1Q8N123 301 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 CCDC127Q96BQ5 260 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 TAOK3Q9H2K8 898 aa13.69□□□□□ -0.22
LINC00540-203ENST00000631321 ACTR5Q9H9F9 607 aaPredicted RBP13.69□□□□□ -0.22
LINC00540-203ENST00000631321 RIPK2O43353 540 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 CCDC121Q6ZUS5 278 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 CCDC105Q8IYK2 499 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 CACNA2D3Q8IZS8 1091 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 TTLL6Q8N841 843 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 MDM1Q8TC05 714 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 ATXN2LQ8WWM7 1075 aaKnown RBP13.68□□□□□ -0.22
LINC00540-203ENST00000631321 BSNDQ8WZ55 320 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 P3H4Q92791 437 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 CHMP6Q96FZ7 201 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 ZNF317Q96PQ6 595 aaPredicted RBP13.68□□□□□ -0.22
LINC00540-203ENST00000631321 RMDN3Q96TC7 470 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 POP1Q99575 1024 aaKnown RBP13.68□□□□□ -0.22
LINC00540-203ENST00000631321 MOV10L1Q9BXT6 1211 aaKnown RBP13.68□□□□□ -0.22
LINC00540-203ENST00000631321 KMT5AQ9NQR1 393 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 AVENQ9NQS1 362 aaPredicted RBP13.68□□□□□ -0.22
LINC00540-203ENST00000631321 TOPORSQ9NS56 1045 aaPredicted RBP13.68□□□□□ -0.22
LINC00540-203ENST00000631321 RGS16O15492 202 aaPredicted RBP13.68□□□□□ -0.22
LINC00540-203ENST00000631321 STBD1O95210 358 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 RTP1P59025 263 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 LACTB2Q53H82 288 aaPredicted RBP13.68□□□□□ -0.22
LINC00540-203ENST00000631321 MFSD5Q6N075 450 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 RNF207Q6ZRF8 634 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 SV2AQ7L0J3 742 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 FAM81BQ96LP2 452 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 KIFC3Q9BVG8 833 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 PLVAPQ9BX97 442 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 CCDC134Q9H6E4 229 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms