RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 MAP4K3Q8IVH8 894 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 LRRC43Q8N309 656 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 KCNN1Q92952 543 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 HPS3Q969F9 1004 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 MRPL9Q9BYD2 267 aaKnown RBP19.8■□□□□ 0.76
CLN3-239ENST00000628023 UBN1Q9NPG3 1134 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 RNF19AQ9NV58 838 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 HOOK1Q9UJC3 728 aaKnown RBP19.8■□□□□ 0.76
CLN3-239ENST00000628023 EXOC7Q9UPT5 735 aa19.8■□□□□ 0.76
CLN3-239ENST00000628023 MEIS3P2A8K0S8 358 aa19.79■□□□□ 0.76
CLN3-239ENST00000628023 GOLGA6L22H0YM25 854 aa19.79■□□□□ 0.76
CLN3-239ENST00000628023 NR1I2O75469 434 aa19.79■□□□□ 0.76
CLN3-239ENST00000628023 SNW1Q13573 536 aaKnown RBP19.79■□□□□ 0.76
CLN3-239ENST00000628023 POSTNQ15063 836 aa19.79■□□□□ 0.76
CLN3-239ENST00000628023 L1TD1Q5T7N2 865 aaKnown RBP19.79■□□□□ 0.76
CLN3-239ENST00000628023 SYCP3Q8IZU3 236 aa19.79■□□□□ 0.76
CLN3-239ENST00000628023 ENGASEQ8NFI3 743 aa19.79■□□□□ 0.76
CLN3-239ENST00000628023 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.79■□□□□ 0.76
CLN3-239ENST00000628023 RSPH1Q8WYR4 309 aa19.79■□□□□ 0.76
CLN3-239ENST00000628023 CLP1Q92989 425 aaKnown RBP19.79■□□□□ 0.76
CLN3-239ENST00000628023 PABPC5Q96DU9 382 aaKnown RBP19.79■□□□□ 0.76
CLN3-239ENST00000628023 CASD1Q96PB1 797 aa19.79■□□□□ 0.76
CLN3-239ENST00000628023 ACCSQ96QU6 501 aa19.79■□□□□ 0.76
CLN3-239ENST00000628023 PLVAPQ9BX97 442 aa19.79■□□□□ 0.76
CLN3-239ENST00000628023 CDT1Q9H211 546 aa19.79■□□□□ 0.76
CLN3-239ENST00000628023 CLDN3O15551 220 aa19.78■□□□□ 0.76
CLN3-239ENST00000628023 PPP1R37O75864 691 aa19.78■□□□□ 0.76
CLN3-239ENST00000628023 RPN1P04843 607 aaKnown RBP19.78■□□□□ 0.76
CLN3-239ENST00000628023 MCF2P10911 925 aa19.78■□□□□ 0.76
CLN3-239ENST00000628023 AKAP5P24588 427 aa19.78■□□□□ 0.76
CLN3-239ENST00000628023 CASP5P51878 434 aa19.78■□□□□ 0.76
CLN3-239ENST00000628023 NOLC1Q14978 699 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLN3-239ENST00000628023 AGMOQ6ZNB7 445 aa19.78■□□□□ 0.76
CLN3-239ENST00000628023 CLEC17AQ6ZS10 378 aa19.78■□□□□ 0.76
CLN3-239ENST00000628023 RPS6KC1Q96S38 1066 aa19.78■□□□□ 0.76
CLN3-239ENST00000628023 FGFBP2Q9BYJ0 223 aa19.78■□□□□ 0.76
CLN3-239ENST00000628023 RNF39Q9H2S5 420 aa19.78■□□□□ 0.76
CLN3-239ENST00000628023 SNTG2Q9NY99 539 aa19.78■□□□□ 0.76
CLN3-239ENST00000628023 GDAQ9Y2T3 454 aa19.78■□□□□ 0.76
CLN3-239ENST00000628023 MRPL42Q9Y6G3 142 aaKnown RBP19.78■□□□□ 0.76
CLN3-239ENST00000628023 OFD1O75665 1012 aa19.77■□□□□ 0.76
CLN3-239ENST00000628023 PRPF6O94906 941 aaKnown RBP19.77■□□□□ 0.76
CLN3-239ENST00000628023 PIGRP01833 764 aa19.77■□□□□ 0.76
CLN3-239ENST00000628023 SSTR3P32745 418 aaPredicted RBP19.77■□□□□ 0.76
CLN3-239ENST00000628023 MLH1P40692 756 aa19.77■□□□□ 0.76
CLN3-239ENST00000628023 RNASELQ05823 741 aaKnown RBP19.77■□□□□ 0.76
CLN3-239ENST00000628023 DPYDQ12882 1025 aa19.77■□□□□ 0.76
CLN3-239ENST00000628023 KMT5BQ4FZB7 885 aa19.77■□□□□ 0.76
CLN3-239ENST00000628023 NOMO2Q5JPE7 1267 aa19.77■□□□□ 0.76
CLN3-239ENST00000628023 GJD3Q8N144 294 aa19.77■□□□□ 0.76
CLN3-239ENST00000628023 PPP2R3CQ969Q6 453 aa19.77■□□□□ 0.76
CLN3-239ENST00000628023 ZBTB45Q96K62 511 aaPredicted RBP19.77■□□□□ 0.76
CLN3-239ENST00000628023 TIGD1Q96MW7 591 aa19.77■□□□□ 0.76
CLN3-239ENST00000628023 CCDC94Q9BW85 323 aaPredicted RBP19.77■□□□□ 0.76
CLN3-239ENST00000628023 EPHX3Q9H6B9 360 aa19.77■□□□□ 0.76
CLN3-239ENST00000628023 PTPRHQ9HD43 1115 aa19.77■□□□□ 0.76
CLN3-239ENST00000628023 CLDND1Q9NY35 253 aa19.77■□□□□ 0.76
CLN3-239ENST00000628023 GIT1Q9Y2X7 761 aa19.77■□□□□ 0.76
CLN3-239ENST00000628023 FNDC1Q4ZHG4 1894 aaPredicted RBP19.77■□□□□ 0.76
CLN3-239ENST00000628023 GRXCR2A6NFK2 248 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 H3BQ06 376 aaPredicted RBP19.76■□□□□ 0.75
CLN3-239ENST00000628023 RECQL4O94761 1208 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 POMCP01189 267 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 PROZP22891 400 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 YARSP54577 528 aaKnown RBP19.76■□□□□ 0.75
CLN3-239ENST00000628023 OSTNP61366 133 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 PNOCQ13519 176 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 TMEM31Q5JXX7 168 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 THNSL1Q8IYQ7 743 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 GLIS3Q8NEA6 775 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 P2RX5Q93086 422 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 GAD1Q99259 594 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 TMEM206Q9H813 350 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 SLC39A2Q9NP94 309 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 AAASQ9NRG9 546 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 TYW1Q9NV66 732 aaKnown RBP19.76■□□□□ 0.75
CLN3-239ENST00000628023 KLK14Q9P0G3 267 aa19.76■□□□□ 0.75
CLN3-239ENST00000628023 MYO7AQ13402 2215 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 ARL5CA6NH57 179 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 GRM6O15303 877 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 EIF3DO15371 548 aaKnown RBP eCLIP19.75■□□□□ 0.75
CLN3-239ENST00000628023 KLRC4O43908 158 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 SMC2O95347 1197 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 MCL1Q07820 350 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 EHHADHQ08426 723 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 KCNA1Q09470 495 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 SLFN12LQ6IEE8 588 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 CEP120Q8N960 986 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 ZFP42Q96MM3 310 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 FAM193BQ96PV7 902 aaPredicted RBP19.75■□□□□ 0.75
CLN3-239ENST00000628023 MSTO1Q9BUK6 570 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 STRA6Q9BX79 667 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 GBP3Q9H0R5 595 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 TOPORSQ9NS56 1045 aaPredicted RBP19.75■□□□□ 0.75
CLN3-239ENST00000628023 TBC1D13Q9NVG8 400 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 KANSL3Q9P2N6 904 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 HCSTQ9UBK5 93 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 UBE4BO95155 1302 aa19.75■□□□□ 0.75
CLN3-239ENST00000628023 ZMYM2Q9UBW7 1377 aa19.74■□□□□ 0.75
CLN3-239ENST00000628023 ABLIM1O14639 778 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms