RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 AGXT2Q9BYV1 514 aa16.33■□□□□ 0.2
PNKP-218ENST00000625299 KCNMB3Q9NPA1 279 aa16.33■□□□□ 0.2
PNKP-218ENST00000625299 FBXW11Q9UKB1 542 aa16.33■□□□□ 0.2
PNKP-218ENST00000625299 KCNJ14Q9UNX9 436 aa16.33■□□□□ 0.2
PNKP-218ENST00000625299 MTF2Q9Y483 593 aaPredicted RBP16.33■□□□□ 0.2
PNKP-218ENST00000625299 ZFP37Q9Y6Q3 630 aaPredicted RBP16.33■□□□□ 0.2
PNKP-218ENST00000625299 SF3B1O75533 1304 aaKnown RBP eCLIP16.33■□□□□ 0.2
PNKP-218ENST00000625299 CCDC194A0A1B0GVG4 234 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 FAM170BA6NMN3 283 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 SPTBN2O15020 2390 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 B4GALT5O43286 388 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 CCNT1O60563 726 aaKnown RBP16.32■□□□□ 0.2
PNKP-218ENST00000625299 C1RP00736 705 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 C8AP07357 584 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 CD72P21854 359 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 HSPA4P34932 840 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 MBTD1Q05BQ5 628 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 HSP90AA2PQ14568 343 aaPredicted RBP16.32■□□□□ 0.2
PNKP-218ENST00000625299 MXD4Q14582 209 aaPredicted RBP16.32■□□□□ 0.2
PNKP-218ENST00000625299 PCBP1Q15365 356 aaKnown RBP eCLIP16.32■□□□□ 0.2
PNKP-218ENST00000625299 EPHA7Q15375 998 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 NPY5RQ15761 445 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 SLC44A4Q53GD3 710 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 TPH2Q8IWU9 490 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 FBXL16Q8N461 479 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 ASAP3Q8TDY4 903 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 ATRIPQ8WXE1 791 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 FGF13Q92913 245 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 KCNB2Q92953 911 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 FAM20AQ96MK3 541 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 KXD1Q9BQD3 176 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 PAAF1Q9BRP4 392 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 XPNPEP1Q9NQW7 623 aa16.32■□□□□ 0.2
PNKP-218ENST00000625299 CASTOR2A6NHX0 329 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 SPTLC1O15269 473 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 KRT37O76014 449 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 PSMA5P28066 241 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 PRKCQQ04759 706 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 STK3Q13188 491 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 CAPSQ13938 189 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 PSMD5Q16401 504 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 ZNF528Q3MIS6 628 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 NEK8Q86SG6 692 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 POTEDQ86YR6 584 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 GSTCDQ8NEC7 633 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 ITFG1Q8TB96 612 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 CCDC43Q96MW1 224 aaKnown RBP16.31■□□□□ 0.2
PNKP-218ENST00000625299 LARP6Q9BRS8 491 aaKnown RBP16.31■□□□□ 0.2
PNKP-218ENST00000625299 TTPALQ9BTX7 342 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 ZSWIM4Q9H7M6 989 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 FBXO4Q9UKT5 387 aa16.31■□□□□ 0.2
PNKP-218ENST00000625299 TPRP12270 2363 aaKnown RBP16.31■□□□□ 0.2
PNKP-218ENST00000625299 XYLBO75191 536 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 KIF4AO95239 1232 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 HNRNPA1P09651 372 aaKnown RBP eCLIP16.3■□□□□ 0.2
PNKP-218ENST00000625299 PFKPQ01813 784 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 AMHR2Q16671 573 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 FAM171A1Q5VUB5 890 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 GALNT17Q6IS24 598 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 SLC27A1Q6PCB7 646 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 GPR65Q8IYL9 337 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 SLC7A14Q8TBB6 771 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 ING5Q8WYH8 240 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 HAS1Q92839 578 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 SECISBP2LQ93073 1101 aaKnown RBP16.3■□□□□ 0.2
PNKP-218ENST00000625299 CLSTN3Q9BQT9 956 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 PHF20Q9BVI0 1012 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 LTB4R2Q9NPC1 389 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 SMG5Q9UPR3 1016 aaKnown RBP16.3■□□□□ 0.2
PNKP-218ENST00000625299 PCDHGA2Q9Y5H1 932 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 EPG5Q9HCE0 2579 aa16.3■□□□□ 0.2
PNKP-218ENST00000625299 GCFC2P16383 781 aaKnown RBP16.29■□□□□ 0.2
PNKP-218ENST00000625299 TUSC3Q13454 348 aa16.29■□□□□ 0.2
PNKP-218ENST00000625299 TOB2Q14106 344 aaPredicted RBP16.29■□□□□ 0.2
PNKP-218ENST00000625299 PPP4R3AQ6IN85 833 aa16.29■□□□□ 0.2
PNKP-218ENST00000625299 CPLX2Q6PUV4 134 aaKnown RBP16.29■□□□□ 0.2
PNKP-218ENST00000625299 TSSK4Q6SA08 328 aa16.29■□□□□ 0.2
PNKP-218ENST00000625299 TPRG1Q6ZUI0 275 aa16.29■□□□□ 0.2
PNKP-218ENST00000625299 PIK3AP1Q6ZUJ8 805 aa16.29■□□□□ 0.2
PNKP-218ENST00000625299 LNX1Q8TBB1 728 aaPredicted RBP16.29■□□□□ 0.2
PNKP-218ENST00000625299 DDX23Q9BUQ8 820 aaKnown RBP16.29■□□□□ 0.2
PNKP-218ENST00000625299 HCFC1R1Q9NWW0 138 aa16.29■□□□□ 0.2
PNKP-218ENST00000625299 CDV3Q9UKY7 258 aaKnown RBP16.29■□□□□ 0.2
PNKP-218ENST00000625299 USP18Q9UMW8 372 aa16.29■□□□□ 0.2
PNKP-218ENST00000625299 ADAM12O43184 909 aa16.28■□□□□ 0.2
PNKP-218ENST00000625299 ATXN1P54253 815 aaKnown RBP16.28■□□□□ 0.2
PNKP-218ENST00000625299 EVCP57679 992 aa16.28■□□□□ 0.2
PNKP-218ENST00000625299 TMEM132AQ24JP5 1023 aa16.28■□□□□ 0.2
PNKP-218ENST00000625299 ZBTB41Q5SVQ8 909 aa16.28■□□□□ 0.2
PNKP-218ENST00000625299 IFNLR1Q8IU57 520 aaPredicted RBP16.28■□□□□ 0.2
PNKP-218ENST00000625299 PIK3R5Q8WYR1 880 aa16.28■□□□□ 0.2
PNKP-218ENST00000625299 OSBPL6Q9BZF3 934 aa16.28■□□□□ 0.2
PNKP-218ENST00000625299 POLR3FQ9H1D9 316 aaPredicted RBP16.28■□□□□ 0.2
PNKP-218ENST00000625299 ZSCAN32Q9NX65 697 aa16.28■□□□□ 0.2
PNKP-218ENST00000625299 VWA8A3KMH1 1905 aa16.27■□□□□ 0.2
PNKP-218ENST00000625299 LRRIQ4A6NIV6 560 aa16.27■□□□□ 0.2
PNKP-218ENST00000625299 TBX3O15119 743 aa16.27■□□□□ 0.2
PNKP-218ENST00000625299 DGAT1O75907 488 aa16.27■□□□□ 0.2
PNKP-218ENST00000625299 BAG4O95429 457 aaKnown RBP16.27■□□□□ 0.2
PNKP-218ENST00000625299 SDHBP21912 280 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms