RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 FAM189BP81408 668 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 SMN1Q16637 294 aaKnown RBP6.95□□□□□ -1.3
VPS29-212ENST00000621131 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS29-212ENST00000621131 KRTAP15-1Q3LI76 137 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 SDE2Q6IQ49 451 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 DRICH1Q6PGQ1 229 aaPredicted RBP6.95□□□□□ -1.3
VPS29-212ENST00000621131 BTNL9Q6UXG8 535 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 SYT12Q8IV01 421 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 SYNE4Q8N205 404 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 AFAP1L2Q8N4X5 818 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 LMBR1Q8WVP7 490 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 RAX2Q96IS3 184 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 PAWRQ96IZ0 340 aaKnown RBP6.95□□□□□ -1.3
VPS29-212ENST00000621131 VTA1Q9NP79 307 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 DPP7Q9UHL4 492 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 EIF2B4Q9UI10 523 aaKnown RBP6.95□□□□□ -1.3
VPS29-212ENST00000621131 RPTORQ8N122 1335 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 PBRM1Q86U86 1689 aa6.94□□□□□ -1.3
VPS29-212ENST00000621131 EYA4O95677 639 aa6.94□□□□□ -1.3
VPS29-212ENST00000621131 SOX5P35711 763 aa6.94□□□□□ -1.3
VPS29-212ENST00000621131 COL10A1Q03692 680 aa6.94□□□□□ -1.3
VPS29-212ENST00000621131 MBNL2Q5VZF2 373 aaKnown RBP6.94□□□□□ -1.3
VPS29-212ENST00000621131 VRK3Q8IV63 474 aa6.94□□□□□ -1.3
VPS29-212ENST00000621131 MDM1Q8TC05 714 aa6.94□□□□□ -1.3
VPS29-212ENST00000621131 PROKR1Q8TCW9 393 aa6.94□□□□□ -1.3
VPS29-212ENST00000621131 CEP95Q96GE4 821 aa6.94□□□□□ -1.3
VPS29-212ENST00000621131 DCLRE1CQ96SD1 692 aaKnown RBP6.94□□□□□ -1.3
VPS29-212ENST00000621131 ORAI2Q96SN7 254 aa6.94□□□□□ -1.3
VPS29-212ENST00000621131 SLC46A2Q9BY10 475 aa6.94□□□□□ -1.3
VPS29-212ENST00000621131 SLKQ9H2G2 1235 aaPredicted RBP6.94□□□□□ -1.3
VPS29-212ENST00000621131 SPON1Q9HCB6 807 aa6.94□□□□□ -1.3
VPS29-212ENST00000621131 CHST2Q9Y4C5 530 aa6.94□□□□□ -1.3
VPS29-212ENST00000621131 TDRD9Q8NDG6 1382 aaKnown RBP6.94□□□□□ -1.3
VPS29-212ENST00000621131 CLIP1P30622 1438 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 AQRO60306 1485 aaKnown RBP eCLIP6.93□□□□□ -1.32e-6■■■■□ 21.4
VPS29-212ENST00000621131 B5MCH6 92 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 BRINP1O60477 761 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 CANXP27824 592 aaKnown RBP6.93□□□□□ -1.3
VPS29-212ENST00000621131 CRHR1P34998 444 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 MRPS9P82933 396 aaKnown RBP6.93□□□□□ -1.3
VPS29-212ENST00000621131 CDK17Q00537 523 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 BMT2Q1RMZ1 405 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 MFSD14BQ5SR56 506 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 LY6G5CQ5SRR4 150 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 LRRC55Q6ZSA7 311 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 TSPEARQ8WU66 669 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 CHAC2Q8WUX2 184 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 MYEOVQ96EZ4 313 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 FAM193BQ96PV7 902 aaPredicted RBP6.93□□□□□ -1.3
VPS29-212ENST00000621131 TRPM5Q9NZQ8 1165 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 DKK2Q9UBU2 259 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 TMA7Q9Y2S6 64 aaKnown RBP6.93□□□□□ -1.3
VPS29-212ENST00000621131 CTTNBP2Q8WZ74 1663 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 CARMIL1Q5VZK9 1371 aa6.93□□□□□ -1.3
VPS29-212ENST00000621131 KDM6BO15054 1643 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 GOLGA8AA7E2F4 631 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 PHF2O75151 1096 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 PPFIA4O75335 1185 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 ABHD16AO95870 558 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 ZSCAN20P17040 1043 aaPredicted RBP6.92□□□□□ -1.3
VPS29-212ENST00000621131 LAG3P18627 525 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 PROZP22891 400 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 NHLH2Q02577 135 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 PTPAQ15257 358 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 TIGD2Q4W5G0 525 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 PRAMEF14Q5SWL7 426 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 METRNLQ641Q3 311 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 PDZD4Q76G19 769 aaPredicted RBP6.92□□□□□ -1.3
VPS29-212ENST00000621131 KCNK18Q7Z418 384 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 GDF7Q7Z4P5 450 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 GPR156Q8NFN8 814 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 ZNF480Q8WV37 535 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 RIN2Q8WYP3 895 aaPredicted RBP6.92□□□□□ -1.3
VPS29-212ENST00000621131 SCOCQ9UIL1 159 aa6.92□□□□□ -1.3
VPS29-212ENST00000621131 CENPVL1A0A0U1RR11 272 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 TMEM200CA6NKL6 621 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 ADCY6O43306 1168 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 GCP02774 474 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 RNASE9P60153 205 aaKnown RBP6.91□□□□□ -1.3
VPS29-212ENST00000621131 STAT4Q14765 748 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 MST1LQ2TV78 715 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 FAM47AQ5JRC9 791 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 EFCAB12Q6NXP0 572 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 Q6ZVL8 140 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 OR10H5Q8NGA6 315 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 TGFBRAP1Q8WUH2 860 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 AUTS2Q8WXX7 1259 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 TEX101Q9BY14 249 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 ADGRL1O94910 1474 aa6.91□□□□□ -1.3
VPS29-212ENST00000621131 DIRC3C9JPN6 131 aa6.9□□□□□ -1.3
VPS29-212ENST00000621131 WNT10BO00744 389 aa6.9□□□□□ -1.3
VPS29-212ENST00000621131 AKR1B10O60218 316 aa6.9□□□□□ -1.3
VPS29-212ENST00000621131 RBP3P10745 1247 aa6.9□□□□□ -1.3
VPS29-212ENST00000621131 ADSLP30566 484 aaPredicted RBP6.9□□□□□ -1.3
VPS29-212ENST00000621131 FLT3LGP49771 235 aa6.9□□□□□ -1.3
VPS29-212ENST00000621131 SCAND1P57086 179 aa6.9□□□□□ -1.3
VPS29-212ENST00000621131 FSTL1Q12841 308 aa6.9□□□□□ -1.3
VPS29-212ENST00000621131 ADRM1Q16186 407 aa6.9□□□□□ -1.3
VPS29-212ENST00000621131 MUM1Q2TAK8 710 aa6.9□□□□□ -1.3
VPS29-212ENST00000621131 KCNV1Q6PIU1 500 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms